Browse Element(s) Details


OsAffx.28409.2.S1_s_at

Description tigr:9635.m01200
TID=OsAffx.28409.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1224011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein
LOC_Os07g12250Os.14565.1.S1_at11/117+6862983..686512660S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28409.2.S1_s_at--635--9611Chr07:6854951..6854975 (25 bp)
TCATCCCTCATGATGTTGGTACTGG
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--616--6991Chr07:6854969..6854993 (25 bp)
GTACTGGGACCATTGATCATAGATG
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--519--631Chr07:6855133..6855157 (25 bp)
ATGCTTTGATGCAATGACTGTCACA
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--424--5711Chr07:6855148..6855172 (25 bp)
GACTGTCACAACGAGGTTAGGCCTC
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--485--6071Chr07:6855203..6855227 (25 bp)
GAGTGCCAAGGGTGTGACATCCCTA
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--396--5671Chr07:6855218..6855242 (25 bp)
GACATCCCTATGGATGCTACCGTGG
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--880--4851Chr07:6855233..6855257 (25 bp)
GCTACCGTGGATGAGCTGTTGGATA
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--570--7971Chr07:6855286..6855310 (25 bp)
GGATGCCTTTTATGTGTTCGATCGC
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--256--6711Chr07:6855301..6855325 (25 bp)
GTTCGATCGCAATGAGGATGGCTTC
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--905--6231Chr07:6855317..6855341 (25 bp)
GATGGCTTCATATGTGCCTCGGAAC
LOC_Os07g12240
OsAffx.28409.2.S1_s_at--1131--691Chr07:6855398..6855422 (25 bp)
ATGAGGATGATCCACACCTTCGATG
LOC_Os07g12240
Target Sequence 
TCATCCCTCATGATGTTGGTACTGGGACCATTGATCATAGATGTGATTTCGTTGCTTGGAGGAGGGGTGTCATGCTTTGA
TGCAATGACTGTCACAACGAGGTTAGGCCTCAGGTGGCAAAGGAGTGGGGAGGCCGCCATGGAGTGCCAAGGGTGTGACA
TCCCTATGGATGCTACCGTGGATGAGCTGTTGGATAGGAAGATGGCGAGCGAGGGTGAGCTTAAGGATGCCTTTTATGTG
TTCGATCGCAATGAGGATGGCTTCATATGTGCCTCGGAACTGTGGAGCGTGATGAGGAGGCTAGGGTTCAAAGAAGGGCA
AAGGTATGAGGACTGTATGAGGATGATCCACACCTTCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28409.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis