Browse Element(s) Details


OsAffx.22440.1.S1_at

Description tigr:9635.m01197
TID=OsAffx.22440.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1221011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12170Os.10276.2.S1_at10/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12170Os.12389.1.S1_x_at1/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein

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Gene Ontology Classification
GO idTypeName
GO:0009873biological_processethylene mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22440.1.S1_at--1061--4071Chr07:6832808..6832832 (25 bp)
CGAGCTCGAGTCCTCCATATGGGAG
LOC_Os07g12210
OsAffx.22440.1.S1_at--114--1151Chr07:6832816..6832840 (25 bp)
AGTCCTCCATATGGGAGAGCGCGCT
LOC_Os07g12210
OsAffx.22440.1.S1_at--699--4851Chr07:6832861..6832885 (25 bp)
GCTACGTCGTGATGCCGTCGTTCAT
LOC_Os07g12210
OsAffx.22440.1.S1_at--787--3991Chr07:6832868..6832892 (25 bp)
CGTGATGCCGTCGTTCATCCTGCTG
LOC_Os07g12210
OsAffx.22440.1.S1_at--782--5091Chr07:6832949..6832973 (25 bp)
GCACGCAGGCCCTGAGCCTGAGAGC
LOC_Os07g12210
OsAffx.22440.1.S1_at--184--311Chr07:6833014..6833038 (25 bp)
ATACCGTCACTACCGGGCCGGAGCT
LOC_Os07g12210
OsAffx.22440.1.S1_at--161--3211Chr07:6833060..6833084 (25 bp)
CAATGGCGCCACTGTCGAGGGAGAA
LOC_Os07g12210
OsAffx.22440.1.S1_at--498--7291Chr07:6833109..6833133 (25 bp)
GTGCCGCCATTGCTCGAGCAACACG
LOC_Os07g12210
OsAffx.22440.1.S1_at--454--6171Chr07:6833139..6833163 (25 bp)
GAGGATCATGATCACCACCGGCAGC
LOC_Os07g12210
OsAffx.22440.1.S1_at--888--1771Chr07:6833155..6833179 (25 bp)
ACCGGCAGCATGGTGGCTTCTCCGG
LOC_Os07g12210
OsAffx.22440.1.S1_at--40--8591Chr07:6833214..6833238 (25 bp)
TGGTTTGACTACGACGAGGTGCTTC
LOC_Os07g12210
Target Sequence 
CGAGCTCGAGTCCTCCATATGGGAGAGCGCGCTCCGCGGCGAGCGCGAGCGCCGCTACGTCGTGATGCCGTCGTTCATCC
TGCTGCCGCCGCCGCCGCCGCCGCCGCCACAGCACGCGCACTCCGCCGAGAGCGCGGCGGCGCACGCAGGCCCTGAGCCT
GAGAGCGCCGACCAAACCGCCGTCGACTTCTCCGTCTCCGGCGAGGATACCGTCACTACCGGGCCGGAGCTCGAACAGCT
GGTGGGCGACGGCAATGGCGCCACTGTCGAGGGAGAAGGGCAGAAGACGGAGGACTCGCCGGTGCCGCCATTGCTCGAGC
AACACGGCGGCGAGGATCATGATCACCACCGGCAGCATGGTGGCTTCTCCGGCGAGGTCTCCGGCGCGGCGCCGGAAGAT
GTTGACTGGTTTGACTACGACGAGGTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis