Browse Element(s) Details


OsAffx.22708.3.S1_x_at

Description gb:NM_184757.1
DB_XREF= gi:34896603
TID=OsAffx.22708.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026A15.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3698011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g121909/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g199309/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g072708/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g092508/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g165707/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g187807/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed
LOC_Os03g37020NANA3+20474531..20475070hypothetical protein
LOC_Os03g37030NANA3+20484599..20485066hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.3.S1_x_at--521--2831Chr03:20462752..20462776 (25 bp)
AAGTATTCTGAACTGATCTCCGTGC
LOC_Os03g36980
OsAffx.22708.3.S1_x_at--429--474Chr01:9408563..9408586 (24 bp)
ATCTCCGTGCTCATGGAAGCGCAAG
LOC_Os01g16570
OsAffx.22708.3.S1_x_at--459--8816Chr05:5149301..5149325 (25 bp)
TGTTGAAAATCATACGTCTCGCCCC
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--818--8515Chr01:9408630..9408654 (25 bp)
TGGAAGTTCAGCAGCACCCGAAGCA
LOC_Os01g16570
OsAffx.22708.3.S1_x_at--666--5117Chr05:5149350..5149374 (25 bp)
GCAAATGCTAGCTCCTTTAAGAAGG
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--17--2757Chr05:5149479..5149503 (25 bp)
AAGAAGGGCTCTACTAGTGGTGAAT
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--506--5937Chr05:5149623..5149647 (25 bp)
GAGCATGAGTCACACTTCACTGTTG
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--620--2054Chr05:5149636..5149660 (25 bp)
ACTTCACTGTTGAGATCCAGCACTC
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--696--6235Chr05:5149670..5149694 (25 bp)
GATGGCTGCCATGCATATCGACAAG
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--312--5297Chr05:5149706..5149730 (25 bp)
GAAGGCAGTGGTTGCAATGCACATC
LOC_Os05g09250
OsAffx.22708.3.S1_x_at--817--5897Chr05:5149764..5149788 (25 bp)
GAGCTGAAGCTCTCAGATGATCTCA
LOC_Os05g09250
Target Sequence 
AAGTATTCTGAACTGATCTCCGTGCTCATGGAAGCGCAAGGAGAAGATGAGACACTTGTTGAAAATCATACGTCTCGCCC
CACTGGAAGTTCAGCAGCACCCGAAGCAAATGCTAGCTCCTTTAAGAAGGGGAAAAACCAGAATAACCAGAACAAAGGGA
AGAATTTCTGGAAAAATAATGGTAAAGTTAACAAGATGTCTTTCAAGAAGAAAGGAAATCAGAATAGTAAGTCTAAGAAG
GGCTCTACTAGTGGTGAATATGGAAAGCAATATCAGGTATGCTTCAAGTGTGGCACTAGGGGACACTGGTCTCGCATTTG
CCGCACCCCTAAGCATCTCATTGAGCTTTATCAAGAGAAGCACGGGAAGAAGAAGTCAGAGCATGAGTCACACTTCACTG
TTGAGATCCAGCACTCAGAGGAGAAGATGGCTGCCATGCATATCGACAAGCAGGTCGACGAGAAGGCAGTGGTTGCAATG
CACATCGATGATAAGATGGAACATAATGCAGTAGACGCAGAGCTGAAGCTCTCAGATGATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis