Browse Element(s) Details


OsAffx.25389.1.S1_at

Description tigr:9631.m03536
TID=OsAffx.25389.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3692011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25389.1.S1_at--984--7151Chr03:20443082..20443106 (25 bp)
GTCTCATCTCTCTGCATATTCAATT
LOC_Os03g36920
OsAffx.25389.1.S1_at--22--3251Chr03:20443053..20443077 (25 bp)
CAAGCTACTTGCCAGATTTTCCTCG
LOC_Os03g36920
OsAffx.25389.1.S1_at--611--8752Chr02:16347067..16347099 (25 bp)
TGTAGCAAGCTTTCAGTCACTTAGA
NONE
OsAffx.25389.1.S1_at--594--691Chr03:20442968..20442992 (25 bp)
ATGAGAATACTCACATGCCCTCTTT
LOC_Os03g36920
OsAffx.25389.1.S1_at--418--6451Chr03:20442844..20442868 (25 bp)
GATCACTACAAAGCCTCTGCATAAG
LOC_Os03g36920
OsAffx.25389.1.S1_at--226--8491Chr03:20442819..20442843 (25 bp)
TGGCTGCAACAATCTACAATCGCTG
LOC_Os03g36920
OsAffx.25389.1.S1_at--214--3071Chr03:20442756..20442780 (25 bp)
AATCTTGTGGAATTGCCCTGAGTTG
LOC_Os03g36920
OsAffx.25389.1.S1_at--208--8211Chr03:20442732..20442756 (25 bp)
GGAATTACTCCCAGACGAGCAGCTG
LOC_Os03g36920
OsAffx.25389.1.S1_at--651--4771Chr03:20442711..20442735 (25 bp)
GCTGCCACTGTCTCTTAGAAAGCTT
LOC_Os03g36920
OsAffx.25389.1.S1_at--12--5571Chr03:20442694..20442718 (25 bp)
GAAAGCTTGAAGTCGCACTCTGTAA
LOC_Os03g36920
OsAffx.25389.1.S1_at--698--8731Chr03:20442674..20442698 (25 bp)
TGTAACCCAGTGCTCAAGGATAGAC
LOC_Os03g36920
Target Sequence 
GTCTCATCTCTCTGCATATTCAATTGCCCCAAGCTACTTGCCAGATTTTCCTCGCCAGTGACCAATGGAGTTGTAGCAAG
CTTTCAGTCACTTAGAAGCCTTATCGTTGATCATATGAGAATACTCACATGCCCTCTTTTAAGGGAAAGGCTTGAGCACA
TTGAGAACCTAGACATCCAAGATTGCTCAGAGATCACCACCTTCACTGCAGACAATGAGGATGTCTTCCTACATCTAAGA
TCACTACAAAGCCTCTGCATAAGTGGCTGCAACAATCTACAATCGCTGCCTTCCTCATTGTCCAGCCTGGAGTCCCTGGA
TAAATTAATCTTGTGGAATTGCCCTGAGTTGGAATTACTCCCAGACGAGCAGCTGCCACTGTCTCTTAGAAAGCTTGAAG
TCGCACTCTGTAACCCAGTGCTCAAGGATAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis