Browse Element(s) Details


OsAffx.22709.1.S1_x_at

Description gb:NM_184753.1
DB_XREF= gi:34896595
TID=OsAffx.22709.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026A15.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3694411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed
LOC_Os03g37020NANA3+20474531..20475070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22709.1.S1_x_at--464--3871Chr03:20452410..20452434 (25 bp)
CTGTCCTACCGCTCGTCGAGGTCAA
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--547--4011Chr03:20452423..20452447 (25 bp)
CGTCGAGGTCAAGCTCTGCGTGGAT
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--1003--9711Chr03:20452431..20452455 (25 bp)
TCAAGCTCTGCGTGGATCTTGCCAC
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--737--2691Chr03:20452433..20452457 (25 bp)
AAGCTCTGCGTGGATCTTGCCACCT
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--445--9491Chr03:20452437..20452461 (25 bp)
TCTGCGTGGATCTTGCCACCTCGAG
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--861--9131Chr03:20452439..20452463 (25 bp)
TGCGTGGATCTTGCCACCTCGAGGG
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--570--7511Chr03:20452442..20452466 (25 bp)
GTGGATCTTGCCACCTCGAGGGCCA
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--260--7971Chr03:20452444..20452468 (25 bp)
GGATCTTGCCACCTCGAGGGCCACG
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--143--431Chr03:20452446..20452470 (25 bp)
ATCTTGCCACCTCGAGGGCCACGGT
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--310--3591Chr03:20452448..20452472 (25 bp)
CTTGCCACCTCGAGGGCCACGGTGG
LOC_Os03g36944
OsAffx.22709.1.S1_x_at--251--7731Chr03:20452468..20452492 (25 bp)
GGTGGCTAGGCCACCAATGGAGATT
LOC_Os03g36944
Target Sequence 
CTGTCCTACCGCTCGTCGAGGTCAAGCTCTGCGTGGATCTTGCCACCTCGAGGGCCACGGTGGCTAGGCCACCAATGGAG
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22709.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis