Browse Element(s) Details


Os.57569.1.S1_at

Description gb:AK103270.1
DB_XREF= gi:32988479
TID=Os.57569.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.57569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative translation initiation factor (OSJNBa0026A15.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124H10, full insert sequence.
FL= gb:AK073640.1 gb:AK103270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g451909/11Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g369306/11Eukaryotic initiation factor 4A-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45140OsAffx.23663.1.S1_at11/111+25942711..25944201UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45150NANA1+25949851..25950624hypothetical protein
LOC_Os01g45160OsAffx.21471.1.S1_at11/111+25954106..25954720hypothetical protein
LOC_Os01g45174OsAffx.29313.1.S1_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45174OsAffx.20631.1.S1_x_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45190Os.57569.1.S1_at9/111+25963806..25967372Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os01g45200Os.11247.1.S1_at11/111+25967568..25974072NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g45210NANA1+25980786..25986881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45220OsAffx.21897.5.S1_x_at4/111+25987198..25990137retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57569.1.S1_at--12--9012Chr01:25966041..25966065 (25 bp)
TGAATTCAGGTCTGGTGCAACCCGT
LOC_Os01g45190
Os.57569.1.S1_at--448--10532Chr01:25966201..25966220 (20 bp)
TTCAGCAGGTCTCTCTTGTCATAAA
LOC_Os01g45190
Os.57569.1.S1_at--273--7232Chr01:25966265..25966289 (25 bp)
GTCGCTCTGGACGTTTTGGTCGCAA
LOC_Os01g45190
Os.57569.1.S1_at--1136--1052Chr01:25966940..25966964 (25 bp)
AGGGTGTGGCCATCAATTTTGTCAA
LOC_Os01g45190
Os.57569.1.S1_at--477--8192Chr01:25966968..25966992 (25 bp)
GGAAGACATCCGTATCCTGAGAGAT
LOC_Os01g45190
Os.57569.1.S1_at--276--7551NONE
GTGGCGCTACCATGTTTTTGATCAT
NONE
Os.57569.1.S1_at--1133--10392Chr01:25967078..25967101 (24 bp)
TTTTGATCATCTGGTCTGGCAACAA
LOC_Os01g45190
Os.57569.1.S1_at--291--10251Chr01:25967122..25967146 (25 bp)
TTTGGTTGACATGCTTTGCCGTGAC
LOC_Os01g45190
Os.57569.1.S1_at--980--10671Chr01:25967137..25967161 (25 bp)
TTGCCGTGACTGTATTGCTATGGAC
LOC_Os01g45190
Os.57569.1.S1_at--539--9891Chr01:25967183..25967205 (23 bp)
TACTAGTGATTGGTTTCGTTCCCTC
LOC_Os01g45190
Os.57569.1.S1_at--449--3771NONE
CTCTCTGGCTTGTGACATGATCTGT
NONE
Target Sequence 
TGAATTCAGGTCTGGTGCAACCCGTGTTCTAATCACGACAGATGTGTGGGCTCGAGGCCTCGATGTTCAGCAGGTCTCTC
TTGTCATAAATTATGATCTTCCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAA
GGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATTGAGCAGTACTACAGCACGCAGATTG
ATGAAATGCCAATGAATGTTGCTGATCTAATTTGAGTGCTGGAGTGGCGCTACCATGTTTTTGATCATCTGGTCTGGCAA
CAACTGAGCTTGTTTGTTGTGATTTTGGTTGACATGCTTTGCCGTGACTGTATTGCTATGGACTTTAAAAGGGTTGCGAG
TCTAATACTAGTGATTGGTTTCGTTCCCTCTCTGGCTTGTGACATGATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis