Browse Element(s) Details


Os.11247.1.S1_at

Description gb:C98974
DB_XREF= gi:3761726
DB_XREF=C98974
CLONE=E3462_1Z
TID=Os.11247.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.11247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamoyl CoA reductase (P0004A09.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4520011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45140OsAffx.23663.1.S1_at11/111+25942711..25944201UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45150NANA1+25949851..25950624hypothetical protein
LOC_Os01g45160OsAffx.21471.1.S1_at11/111+25954106..25954720hypothetical protein
LOC_Os01g45174OsAffx.29313.1.S1_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45174OsAffx.20631.1.S1_x_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45190Os.57569.1.S1_at9/111+25963806..25967372Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os01g45200Os.11247.1.S1_at11/111+25967568..25974072NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g45210NANA1+25980786..25986881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45220OsAffx.21897.5.S1_x_at4/111+25987198..25990137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45234NANA1+25997317..25997937NA

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11247.1.S1_at--492--1871Chr01:25967969..25967993 (25 bp)
ACGACCACGTGGTGAAGAGGCCCGA
LOC_Os01g45200
Os.11247.1.S1_at--922--8411Chr01:25967864..25967888 (25 bp)
GGCCGGCGAGGTTCGATCTGTGCAG
LOC_Os01g45200
Os.11247.1.S1_at--496--9391Chr01:25967852..25967876 (25 bp)
TCGATCTGTGCAGGCAGAAGCTGGC
LOC_Os01g45200
Os.11247.1.S1_at--315--7731Chr01:25967804..25967828 (25 bp)
GGTGCACGTACGACGACTACTACTC
LOC_Os01g45200
Os.11247.1.S1_at--729--6992Chr03:10745817..10746308 (25 bp)
GTACGACGACTACTACTCCGTCGCA
NONE
Os.11247.1.S1_at--154--9911Chr01:25967784..25967808 (25 bp)
TACTCCGTCGCATTCGACTAGATAT
LOC_Os01g45200
Os.11247.1.S1_at--175--111Chr01:25967773..25967797 (25 bp)
ATTCGACTAGATATCTAGCTAGGCT
LOC_Os01g45200
Os.11247.1.S1_at--579--1511Chr01:25967735..25967759 (25 bp)
AGCACCACCGTGCAATGGCTTGCAG
LOC_Os01g45200
Os.11247.1.S1_at--419--3551Chr01:25967691..25967715 (25 bp)
CATCTGGGTTGGGTTTTGCCTGAAG
LOC_Os01g45200
Os.11247.1.S1_at--421--2091Chr01:25967609..25967633 (25 bp)
ACATAGTGCGATCTTGTAGGCTGTT
LOC_Os01g45200
Os.11247.1.S1_at--820--3611Chr01:25967597..25967621 (25 bp)
CTTGTAGGCTGTTTGATGCATCAAT
LOC_Os01g45200
Target Sequence 
ACGACCACGTGGTGAAGAGGCCCGAGGAGTTCGCGGAGCTGGAGCGCCAGCTGGGGATCCCGCGCAGAGCGGCGGCGGCG
GCGGCCGCGCAGGACTCCGGCGACCGGCCGGCGAGGTTCGATCTGTGCAGGCAGAAGCTGGCGAGGCTCATGTCCACCCG
AAGNCGGTGCACGTACGACGACTACTACTCCGTCGCATTCGACTAGATATCTAGCTAGGCTAGGCAAANTGGCGAGCACC
ACCGTGCAATGGCTTGCAGCACNGCNCCAATGATGGATCATCTGGGTTGGGTTTTGCCTGAAGGGTGCAANAGGACGAAN
NCGTAGTGGATGGATGGAAGAAGAGTNTGTGACATCNTGTACATAGTGCGATCTTGTAGGCTGTTTGATGCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis