Browse Element(s) Details


OsAffx.23663.1.S1_at

Description tigr:9629.m04309
TID=OsAffx.23663.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4514011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45090Os.45888.1.S1_at11/111+25919573..25920639LhMyb, putative, expressed
LOC_Os01g45100NANA1+25924052..25924618retrotransposon protein, putative, unclassified
LOC_Os01g45110Os.12253.1.S1_at11/111+25925299..25927215UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein
LOC_Os01g45140OsAffx.23663.1.S1_at11/111+25942711..25944201UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45150NANA1+25949851..25950624hypothetical protein
LOC_Os01g45160OsAffx.21471.1.S1_at11/111+25954106..25954720hypothetical protein
LOC_Os01g45174OsAffx.29313.1.S1_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45174OsAffx.20631.1.S1_x_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45190Os.57569.1.S1_at9/111+25963806..25967372Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os01g45200Os.11247.1.S1_at11/111+25967568..25974072NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23663.1.S1_at--252--4051Chr01:25943606..25943630 (25 bp)
CGATCGCCCGTCTATTGGCGGCGGA
LOC_Os01g45140
OsAffx.23663.1.S1_at--569--9271Chr01:25943662..25943686 (25 bp)
TCCGGCAAGAACTTCCTGTGGATCA
LOC_Os01g45140
OsAffx.23663.1.S1_at--352--8671Chr01:25943678..25943702 (25 bp)
TGTGGATCATCACCCGCGAGGACAC
LOC_Os01g45140
OsAffx.23663.1.S1_at--784--5291Chr01:25943725..25943749 (25 bp)
GAAGGCTTCGCCGATCTGATGGCGC
LOC_Os01g45140
OsAffx.23663.1.S1_at--827--7531Chr01:25943889..25943913 (25 bp)
GTGGCCGCGTTACACCGACCAGTTC
LOC_Os01g45140
OsAffx.23663.1.S1_at--847--4031Chr01:25943931..25943955 (25 bp)
CGTTGAGATGCTTAAGGTCGGCGTC
LOC_Os01g45140
OsAffx.23663.1.S1_at--454--3471Chr01:25943967..25943991 (25 bp)
CAGGGAGTTCGCGTCGTTCATTGAC
LOC_Os01g45140
OsAffx.23663.1.S1_at--362--9391Chr01:25943980..25944004 (25 bp)
TCGTTCATTGACCATCGGAGCCAGG
LOC_Os01g45140
OsAffx.23663.1.S1_at--364--10751Chr01:25943987..25944011 (25 bp)
TTGACCATCGGAGCCAGGTGATTGC
LOC_Os01g45140
OsAffx.23663.1.S1_at--336--2191Chr01:25944121..25944145 (25 bp)
AAGGAGGGCGGCTCTTCCTACGACG
LOC_Os01g45140
OsAffx.23663.1.S1_at--210--10671Chr01:25944135..25944159 (25 bp)
TTCCTACGACGATGCCGGACGGCTG
LOC_Os01g45140
Target Sequence 
CGATCGCCCGTCTATTGGCGGCGGAGCTGACGGAGATCGCCCGCGCCCTGCAACTCTCCGGCAAGAACTTCCTGTGGATC
ATCACCCGCGAGGACACCGACGCATCGGAGTGGATGCCCGAAGGCTTCGCCGATCTGATGGCGCGCGGCGAGCGCGGCCT
CGTCGTCCGGGGCTGGGCGCCGCAGGTGCTCGTCCTGAACCACCCCGCCGTCGGCGGGTTCGTCACGCACTGCGGGTGGA
ACTCCGTGCTGGAAGCCGTGAGCGCTGGCGTGCCGATGGTGGCGTGGCCGCGTTACACCGACCAGTTCTACAACGAGAAG
CTCATCGTTGAGATGCTTAAGGTCGGCGTCGGGGTCGGCGCCAGGGAGTTCGCGTCGTTCATTGACCATCGGAGCCAGGT
GATTGCCGGCGAGGTGATCGCGGAAGCCATCGGGAGAGTGATGGGTGAAGGCGAGGAAGGCGAGGCGATGAGGAAAAAGG
TCAAGGAGCTCCGCGAGAAGGCGAGGAGCGCGGTGAAGGAGGGCGGCTCTTCCTACGACGATGCCGGACGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis