Browse Element(s) Details


Os.45888.1.S1_at

Description gb:NM_192243.1
DB_XREF= gi:34911569
GEN=P0004A09.7
TID=Os.45888.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45888 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Myb-like transcription factor (P0004A09.7), mRNA.
PROD=putative Myb-like transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4509011/11LhMyb, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45050Os.27639.1.S1_x_at8/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050OsAffx.8980.1.S1_at6/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050Os.53731.1.S1_at2/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45060Os.48563.1.S1_x_at10/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45060Os.48563.1.S1_s_at4/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45070Os.27933.2.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070OsAffx.23659.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.2.S1_s_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45080OsAffx.23662.2.S1_at11/111+25917137..25917585hypothetical protein
LOC_Os01g45090Os.45888.1.S1_at11/111+25919573..25920639LhMyb, putative, expressed
LOC_Os01g45100NANA1+25924052..25924618retrotransposon protein, putative, unclassified
LOC_Os01g45110Os.12253.1.S1_at11/111+25925299..25927215UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein
LOC_Os01g45140OsAffx.23663.1.S1_at11/111+25942711..25944201UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45888.1.S1_at--612--9871Chr01:25919660..25919684 (25 bp)
TACATCTCGCAAAACGGCGAAGGAT
LOC_Os01g45090
Os.45888.1.S1_at--242--8391Chr01:25919675..25919699 (25 bp)
GGCGAAGGATCCTGGGACAACCTCG
LOC_Os01g45090
Os.45888.1.S1_at--353--5851Chr01:25920017..25920041 (25 bp)
GACCAAGATACACAGGAAGCCGCGC
LOC_Os01g45090
Os.45888.1.S1_at--37--811Chr01:25920081..25920105 (25 bp)
ATGGGCATGGGCATGTCCACCACCA
LOC_Os01g45090
Os.45888.1.S1_at--863--1651Chr01:25920153..25920177 (25 bp)
AGCCCCGGCGTCTGGGATGAGTACA
LOC_Os01g45090
Os.45888.1.S1_at--854--8891Chr01:25920170..25920194 (25 bp)
TGAGTACATGCAGGCGAGCAGCTTC
LOC_Os01g45090
Os.45888.1.S1_at--22--1691Chr01:25920229..25920253 (25 bp)
ACCACCTCGAAATGGCCGGCGTGGG
LOC_Os01g45090
Os.45888.1.S1_at--63--3451Chr01:25920279..25920303 (25 bp)
CAGTTCGTCCCGACTGAGTTCGGTT
LOC_Os01g45090
Os.45888.1.S1_at--354--6071Chr01:25920294..25920318 (25 bp)
GAGTTCGGTTTCAATGACGGCTTCT
LOC_Os01g45090
Os.45888.1.S1_at--187--5751Chr01:25920309..25920333 (25 bp)
GACGGCTTCTGGAACTTCGTGGACA
LOC_Os01g45090
Os.45888.1.S1_at--738--3891Chr01:25920317..25920341 (25 bp)
CTGGAACTTCGTGGACAACTTCTGG
LOC_Os01g45090
Target Sequence 
TACATCTCGCAAAACGGCGAAGGATCCTGGGACAACCTCGCGCGCTCTGCCGGGCTGAACCGGAACGGGAAGNNNTGCNG
GCTGCGGTGGCTCAACTACCTGAGGCCCGGTGTGCGGCGGGGCAGCATCACGCCGGAGGAGGACATGGTCATCCGGGAGC
TCCACTCCCGGTGGGGGAACAGGTGGTCCAAGATCGCCAAGCACCTCCCCGGCCGNACCGANAANNNNATCAANAANTAC
TGGANGACCAAGATACACAGGAAGCCGCGCGGCAGGAGCCAGCTGCTGCAGGAGCCGTGCGAGGACGCCATGGGCATGGG
CATGTCCACCACCACCAGCGAGGCGGCGTCGACGTCGGCGTCGAGCGGCCAGAGCCAGGCCAGCCCCGGCGTCTGGGATG
AGTACATGCAGGCGAGCAGCTTCCCTCACCCGGAGCTTGTCTCCTTCGCCGCCGACCACCACCTCGAAATGGCCGGCGTG
GGCGAGGTCGCCGCCGCCGCCGCCGCGCAGTTCGTCCCGACTGAGTTCGGTTTCAATGACGGCTTCTGGAACTTCGTGGA
CAACTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis