Browse Element(s) Details


Os.12253.1.S1_at

Description gb:AK103824.1
DB_XREF= gi:32989033
TID=Os.12253.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative salicylate-induced glucosyltransferase (P0004A09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full insert sequence.
FL= gb:AK101659.1 gb:AK103824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4511011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45060Os.48563.1.S1_x_at10/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45060Os.48563.1.S1_s_at4/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45070Os.27933.2.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070OsAffx.23659.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.2.S1_s_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45080OsAffx.23662.2.S1_at11/111+25917137..25917585hypothetical protein
LOC_Os01g45090Os.45888.1.S1_at11/111+25919573..25920639LhMyb, putative, expressed
LOC_Os01g45100NANA1+25924052..25924618retrotransposon protein, putative, unclassified
LOC_Os01g45110Os.12253.1.S1_at11/111+25925299..25927215UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein
LOC_Os01g45140OsAffx.23663.1.S1_at11/111+25942711..25944201UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45150NANA1+25949851..25950624hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12253.1.S1_at--632--9451Chr01:25926629..25926653 (25 bp)
TCGGCTCCATGGACTTCGCGTCGAA
LOC_Os01g45110
Os.12253.1.S1_at--43--4051Chr01:25926740..25926764 (25 bp)
CGATACGGAAAAAGGCGACGGAGCT
LOC_Os01g45110
Os.12253.1.S1_at--654--7191Chr01:25926801..25926825 (25 bp)
GTCGTCGTACGATGATGTTGGAATT
LOC_Os01g45110
Os.12253.1.S1_at--293--3151Chr01:25926822..25926846 (25 bp)
AATTCTGATGGACGAGTTGATGGCT
LOC_Os01g45110
Os.12253.1.S1_at--380--7571Chr01:25926852..25926876 (25 bp)
GGGCTCCGTCAATGTGTGACAGCAC
LOC_Os01g45110
Os.12253.1.S1_at--1113--7071Chr01:25926859..25926883 (25 bp)
GTCAATGTGTGACAGCACTCCCTAA
LOC_Os01g45110
Os.12253.1.S1_at--458--5651Chr01:25926869..25926893 (25 bp)
GACAGCACTCCCTAACAAGGTGATT
LOC_Os01g45110
Os.12253.1.S1_at--962--7751Chr01:25926887..25926911 (25 bp)
GGTGATTGACGGCTTGACGCATCAA
LOC_Os01g45110
Os.12253.1.S1_at--1098--8611Chr01:25926917..25926941 (25 bp)
TGGTGATCGGACATTCGGACATCTC
LOC_Os01g45110
Os.12253.1.S1_at--652--8131Chr01:25926933..25926957 (25 bp)
GGACATCTCCAGAGTCCAGACTATT
LOC_Os01g45110
Os.12253.1.S1_at--1051--6091Chr01:25926944..25926968 (25 bp)
GAGTCCAGACTATTGTCTTTTTCCT
LOC_Os01g45110
Target Sequence 
TCGGCTCCATGGACTTCGCGTCGAAGCTGGAGAACCGCCGGGTGATCATCGGCGGCGAGGTGGTCGCGGGAGCCATAGGG
AGAGTGATGGGCGACGGCGAGGAGGGCGAGGCGATACGGAAAAAGGCGACGGAGCTGGGCGTGAAGGCGAGGGGCGCGCT
GGAGAAGGGTGGGTCGTCGTACGATGATGTTGGAATTCTGATGGACGAGTTGATGGCTCGCCGGGGCTCCGTCAATGTGT
GACAGCACTCCCTAACAAGGTGATTGACGGCTTGACGCATCAAGAAGATGGTGATCGGACATTCGGACATCTCCAGAGTC
CAGACTATTGTCTTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis