Browse Element(s) Details


Os.48563.1.S1_x_at

Description gb:CR278327
DB_XREF= gi:44664893
DB_XREF=CR278327
CLONE=p536g05p5
TID=Os.48563.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polygalacturonase (P0004A09.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4497011/11Polygalacturonase family protein, expressed
LOC_Os01g4506010/11Polygalacturonase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44940OsAffx.11469.1.S1_at10/111+25822085..25823172hypothetical protein
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein
LOC_Os01g44960Os.7269.1.S1_s_at11/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44960Os.11119.1.S1_a_at1/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed
LOC_Os01g45000OsAffx.23660.1.S1_at11/111+25859304..25859655hypothetical protein
LOC_Os01g45010OsAffx.11470.1.S1_at10/111+25861480..25866823hypothetical protein
LOC_Os01g45010Os.54878.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.17021.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.2100.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45020OsAffx.11471.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020OsAffx.11472.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020Os.51902.1.S1_at1/111+25868620..25875764F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48563.1.S1_x_at--816--4892Chr01:25910228..25910252 (25 bp)
GCTTGGTTCAAGATGTACGGTTCTC
LOC_Os01g45060
Os.48563.1.S1_x_at--719--6992Chr01:25910242..25910266 (25 bp)
GTACGGTTCTCGAACATCCAAGTCT
LOC_Os01g45060
Os.48563.1.S1_x_at--504--5492Chr01:25910253..25910277 (25 bp)
GAACATCCAAGTCTCAGAAGTCCAA
LOC_Os01g45060
Os.48563.1.S1_x_at--589--5332Chr01:25910269..25910293 (25 bp)
GAAGTCCAAACACCAATCATCATAG
LOC_Os01g45060
Os.48563.1.S1_x_at--551--3072Chr01:25910283..25910307 (25 bp)
AATCATCATAGACCAGTTTTACTGT
LOC_Os01g45060
Os.48563.1.S1_x_at--1009--3732Chr01:25910322..25910346 (25 bp)
CTCAAATCAAACATCAGCAGTGGCA
LOC_Os01g45060
Os.48563.1.S1_x_at--325--3412Chr01:25910336..25910360 (25 bp)
CAGCAGTGGCAGTATCAGGCGTTCA
LOC_Os01g45060
Os.48563.1.S1_x_at--792--9632Chr01:25910350..25910374 (25 bp)
TCAGGCGTTCAGTATGAGAACATCA
LOC_Os01g45060
Os.48563.1.S1_x_at--339--6192Chr01:25910375..25910399 (25 bp)
GAGGAACATTTACTATCAAGCCTGT
LOC_Os01g45060
Os.48563.1.S1_x_at--623--4812Chr01:25910420..25910444 (25 bp)
GCTCACCTTGTTCAGGGATAACTCT
LOC_Os01g45060
Os.48563.1.S1_x_at--786--9851Chr01:25844594..25844618 (25 bp)
TACAACTCAGGCCTGTCCAAATACC
LOC_Os01g44970
Target Sequence 
GCTTGGTTCAAGATGTACGGTTCTCGAACATCCAAGTCTCAGAAGTCCAAACACCAATCATCATAGACCAGTTTTACTGT
GACAAAAGAACATGCTCAAATCAAACATCAGCAGTGGCAGTATCAGGCGTTCAGTATGAGAACATCAGAGGAACATTTAC
TATCAAGCCTGTTCATTTTGCATGCAGTGACAGCTCACCTTGTTCAGGGATAACTCTTACTGGAGTACAACTCAGGCCTG
TCCAAATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48563.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis