Browse Element(s) Details


OsAffx.23660.1.S1_at

Description tigr:9629.m04294
TID=OsAffx.23660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4500011/11hypothetical protein
LOC_Os09g266901/11transposon protein, putative, Mutator sub-class
LOC_Os05g249901/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed
LOC_Os01g45000OsAffx.23660.1.S1_at11/111+25859304..25859655hypothetical protein
LOC_Os01g45010OsAffx.11470.1.S1_at10/111+25861480..25866823hypothetical protein
LOC_Os01g45010Os.54878.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.17021.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.2100.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45020OsAffx.11471.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020OsAffx.11472.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020Os.51902.1.S1_at1/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45030OsAffx.22699.1.S1_x_at3/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.8201.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.18275.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23660.1.S1_at--157--973Chr01:25859471..25859495 (25 bp)
AGGAGCCTGAGCGTAGTTTAGCTGC
LOC_Os01g45000
OsAffx.23660.1.S1_at--707--4471Chr01:25859475..25859499 (25 bp)
GCCTGAGCGTAGTTTAGCTGCGGTA
LOC_Os01g45000
OsAffx.23660.1.S1_at--766--8911Chr01:25859478..25859502 (25 bp)
TGAGCGTAGTTTAGCTGCGGTAGTT
LOC_Os01g45000
OsAffx.23660.1.S1_at--853--10331Chr01:25859487..25859511 (25 bp)
TTTAGCTGCGGTAGTTGGTGATGCA
LOC_Os01g45000
OsAffx.23660.1.S1_at--260--611Chr01:25859522..25859546 (25 bp)
ATGCTGACGCAGGAGTTAAAACCGT
LOC_Os01g45000
OsAffx.23660.1.S1_at--984--4731Chr01:25859524..25859548 (25 bp)
GCTGACGCAGGAGTTAAAACCGTTT
LOC_Os01g45000
OsAffx.23660.1.S1_at--156--9811Chr01:25859538..25859562 (25 bp)
TAAAACCGTTTTCTATGCCGCACCT
LOC_Os01g45000
OsAffx.23660.1.S1_at--427--1791Chr01:25859542..25859566 (25 bp)
ACCGTTTTCTATGCCGCACCTAATG
LOC_Os01g45000
OsAffx.23660.1.S1_at--346--591Chr01:25859552..25859576 (25 bp)
ATGCCGCACCTAATGGGGTTGTCGA
LOC_Os01g45000
OsAffx.23660.1.S1_at--673--7671Chr01:25859567..25859591 (25 bp)
GGGTTGTCGAACTTGTGCCACCTCC
LOC_Os01g45000
OsAffx.23660.1.S1_at--700--10251Chr01:25859570..25859594 (25 bp)
TTGTCGAACTTGTGCCACCTCCGGC
LOC_Os01g45000
Target Sequence 
AGGAGCCTGAGCGTAGTTTAGCTGCGGTAGTTGGTGATGCAGGAGCGGTAGATGCTGACGCAGGAGTTAAAACCGTTTTC
TATGCCGCACCTAATGGGGTTGTCGAACTTGTGCCACCTCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis