Browse Element(s) Details


OsAffx.11472.1.S1_at

Description tigr:9629.m04297
TID=OsAffx.11472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4502011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed
LOC_Os01g45000OsAffx.23660.1.S1_at11/111+25859304..25859655hypothetical protein
LOC_Os01g45010OsAffx.11470.1.S1_at10/111+25861480..25866823hypothetical protein
LOC_Os01g45010Os.54878.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.17021.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.2100.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45020OsAffx.11471.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020OsAffx.11472.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020Os.51902.1.S1_at1/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45030OsAffx.22699.1.S1_x_at3/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.8201.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.18275.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45040Os.26733.3.S1_x_at5/111+25890095..25893854hypothetical protein
LOC_Os01g45040Os.53731.1.S1_at2/111+25890095..25893854hypothetical protein
LOC_Os01g45050Os.27639.1.S1_x_at8/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050OsAffx.8980.1.S1_at6/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050Os.53731.1.S1_at2/111+25894365..25899817transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11472.1.S1_at--894--5551Chr01:25874906..25874930 (25 bp)
GAAAGAAGACATTCACGACACGTAA
LOC_Os01g45020
OsAffx.11472.1.S1_at--819--1851Chr01:25874892..25874916 (25 bp)
ACGACACGTAAGAACACCATGCTGA
LOC_Os01g45020
OsAffx.11472.1.S1_at--296--2171Chr01:25874879..25874903 (25 bp)
ACACCATGCTGAGCATAAGCAGAAA
LOC_Os01g45020
OsAffx.11472.1.S1_at--1161--9771Chr01:25874864..25874888 (25 bp)
TAAGCAGAAACATCAATCCAGCAGA
LOC_Os01g45020
OsAffx.11472.1.S1_at--953--5531Chr01:25874858..25874882 (25 bp)
GAAACATCAATCCAGCAGACCAAGA
LOC_Os01g45020
OsAffx.11472.1.S1_at--1080--571Chr01:25874849..25874873 (25 bp)
ATCCAGCAGACCAAGAAATGCTCAA
LOC_Os01g45020
OsAffx.11472.1.S1_at--178--5591Chr01:25874835..25874859 (25 bp)
GAAATGCTCAAAACATACAAGAGGA
LOC_Os01g45020
OsAffx.11472.1.S1_at--631--5351Chr01:25874810..25874834 (25 bp)
GAAGAGTGAACAGGGCTTCCATCCC
LOC_Os01g45020
OsAffx.11472.1.S1_at--947--3631Chr01:25874795..25874819 (25 bp)
CTTCCATCCCTCAGTTGTTAGACGA
LOC_Os01g45020
OsAffx.11472.1.S1_at--489--3531Chr01:25874791..25874815 (25 bp)
CATCCCTCAGTTGTTAGACGACACT
LOC_Os01g45020
OsAffx.11472.1.S1_at--870--3431Chr01:25874784..25874808 (25 bp)
CAGTTGTTAGACGACACTGGTGGAG
LOC_Os01g45020
Target Sequence 
GAAAGAAGACATTCACGACACGTAAGAACACCATGCTGAGCATAAGCAGAAACATCAATCCAGCAGACCAAGAAATGCTC
AAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTGTTAGACGACACTGGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis