Browse Element(s) Details


Os.26733.3.S1_x_at

Description gb:CF326680
DB_XREF= gi:33801616
DB_XREF=JMT1--06-L17.g1
CLONE=JMT1--06-L17
TID=Os.26733.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBa0073D04.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2927411/11expressed protein
LOC_Os01g450405/11hypothetical protein
LOC_Os08g155903/11hypothetical protein
LOC_Os03g160103/11protein kinase, putative, expressed
LOC_Os08g156001/11Stomatin-like protein 2, putative
LOC_Os08g062001/11Stomatin-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26733.3.S1_x_at--807--9933Chr08:3414654..3414678 (25 bp)
TACGTCCACTCGCTCAAGGAGGAGG
LOC_Os08g06200
Os.26733.3.S1_x_at--997--2093Chr10:14903740..14903764 (25 bp)
ACATGTGGAGTTCATCTCCCATAAA
LOC_Os10g29274
Os.26733.3.S1_x_at--617--7972Chr10:14903712..14903736 (25 bp)
GGATCCACATAGTATACCTCACACA
LOC_Os10g29274
Os.26733.3.S1_x_at--1052--1193Chr10:14903702..14903726 (25 bp)
AGTATACCTCACACATGAACTCTGT
LOC_Os10g29274
Os.26733.3.S1_x_at--190--2011Chr10:14903684..14903708 (25 bp)
ACTCTGTAATAAGCTGTGGTGATCT
LOC_Os10g29274
Os.26733.3.S1_x_at--823--6414Chr03:8807845..8807869 (25 bp)
GATCTTTATATGCTTCACCAACTGG
LOC_Os03g16010
Os.26733.3.S1_x_at--1063--2553Chr10:14903645..14903669 (25 bp)
AACTGGTGACCAATGGGCTCTTTTC
LOC_Os10g29274
Os.26733.3.S1_x_at--58--2153Chr03:8807896..8807920 (25 bp)
ACAGCCCAGTTTCCTCTTAATTTTG
LOC_Os03g16010
Os.26733.3.S1_x_at--349--171Chr10:14903594..14903618 (25 bp)
ATTTTGTTAATTTTGCACCTTGGTG
LOC_Os10g29274
Os.26733.3.S1_x_at--575--9033Chr03:8807928..8807952 (25 bp)
TGCACCTTGGTGCTCGTGAAGCAAG
LOC_Os03g16010
Os.26733.3.S1_x_at--672--793Chr10:14903404..14903428 (25 bp)
ATGGGATATTCCTCAACTGGCGTGA
LOC_Os10g29274
Target Sequence 
TACGTCCACTCGCTCAAGGAGGAGGCCATCCCCATCCCTGACCAGTCCGCCATCACCAAGGACAACGTCTCCATCCAGAT
CGACGGCGTCCTCTGCGTCAAGNNNNNNNNNNNNNCCTCNCNNNNNAGGGCCACATCTACATGTGGAGTTCATCTCCCAT
AAAAGAGGATCCACATAGTATACCTCACACATGAACTCTGTAATAAGCTGTGGTGATCTTTATATGCTTCACCAACTGGT
GACCAATGGGCTCTTTTCTGAGAAAACAGCCCAGTTTCCTCTTAATTTTGTTAATTTTGCACCTTGGTGCTCGTGAAGCA
AGTGCACTAAGTTCAGATGATGAAGCACATCTTGCCTTCAAGAAGGCAGTTACAACTTCTGATGGGATATTCCTCAACTG
GCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26733.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis