Browse Element(s) Details


OsAffx.20323.1.S1_at

Description gb:NM_196601.1
DB_XREF= gi:37534561
TID=OsAffx.20323.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0073D04.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2925011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29180Os.46505.1.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.3.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20323.1.S1_at--1118--9631Chr10:14895285..14895309 (25 bp)
TCAGGTTGTCGCCAGGCAGCCGACA
LOC_Os10g29250
OsAffx.20323.1.S1_at--300--3491Chr10:14895297..14895321 (25 bp)
CAGGCAGCCGACATCCGAGGAAGAG
LOC_Os10g29250
OsAffx.20323.1.S1_at--730--1011Chr10:14895350..14895374 (25 bp)
AGGTTCGGCGCAAGGTCAGACCGCA
LOC_Os10g29250
OsAffx.20323.1.S1_at--1079--2891Chr10:14895361..14895385 (25 bp)
AAGGTCAGACCGCATTCATGGTGGT
LOC_Os10g29250
OsAffx.20323.1.S1_at--120--9631Chr10:14895376..14895400 (25 bp)
TCATGGTGGTCGAGCAACGCCCCAA
LOC_Os10g29250
OsAffx.20323.1.S1_at--279--131Chr10:14895420..14895444 (25 bp)
ATTCACGGCGCCAAGGACGGTGCCC
LOC_Os10g29250
OsAffx.20323.1.S1_at--807--4712Chr10:14895446..14895470 (25 bp)
GCTGGCTCCAAGGATGTTGCTTCAA
LOC_Os10g29250
OsAffx.20323.1.S1_at--613--8811Chr10:14895460..14895484 (25 bp)
TGTTGCTTCAAGTGCTTGGGCCTAA
LOC_Os10g29250
OsAffx.20323.1.S1_at--638--7393Chr11:18758420..18758441 (22 bp)
GTGATGCTAATTGGCGCGTACGCGC
NONE
OsAffx.20323.1.S1_at--679--3171Chr10:14895496..14895520 (25 bp)
AATTGGCGCGTACGCGCACTTGCTC
LOC_Os10g29250
OsAffx.20323.1.S1_at--1025--4991Chr10:14895541..14895565 (25 bp)
GCATGGGACGCACTTTCCGAGCCTG
LOC_Os10g29250
Target Sequence 
TCAGGTTGTCGCCAGGCAGCCGACATCCGAGGAAGAGGACGTGGATGCGGGTGGGCGTTGGACGGAGGTTCGGCGCAAGG
TCAGACCGCATTCATGGTGGTCGAGCAACGCCCCAACCACCAACGCTTGGGGCGCATTCACGGCGCCAAGGACGGTGCCC
CGCTGGCTCCAAGGATGTTGCTTCAAGTGCTTGGGCCTAAGGGGTGATGCTAATTGGCGCGTACGCGCACTTGCTCCCAC
GCGACTCGCTCTTCCCGCATGGGACGCACTTTCCGAGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis