Browse Element(s) Details


Os.46819.1.S1_at

Description gb:AK109862.1
DB_XREF= gi:32995071
TID=Os.46819.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H06, full insert sequence.
FL= gb:AK109862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2922011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29170Os.46399.1.A1_at10/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.5.S1_x_at3/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.4.S1_x_at2/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29180Os.46505.1.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.3.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46819.1.S1_at--960--6771Chr10:14885409..14885433 (25 bp)
GTTAGGATGCTGGTGCCTCCACTGA
LOC_Os10g29220
Os.46819.1.S1_at--335--7791Chr10:14885420..14885444 (25 bp)
GGTGCCTCCACTGAGTTATGCTTAA
LOC_Os10g29220
Os.46819.1.S1_at--113--4291Chr10:14885424..14885448 (25 bp)
CCTCCACTGAGTTATGCTTAATTAG
LOC_Os10g29220
Os.46819.1.S1_at--1003--1171Chr10:14885447..14885471 (25 bp)
AGTACTATGTTCTAGCATGTGGTTT
LOC_Os10g29220
Os.46819.1.S1_at--587--7491Chr10:14885465..14885489 (25 bp)
GTGGTTTAGAGACCTTTGTCATCAC
LOC_Os10g29220
Os.46819.1.S1_at--1134--4291Chr10:14885477..14885501 (25 bp)
CCTTTGTCATCACATAGTTCTCTTC
LOC_Os10g29220
Os.46819.1.S1_at--311--1231Chr10:14885492..14885516 (25 bp)
AGTTCTCTTCTATATATTTTAGCAA
LOC_Os10g29220
Os.46819.1.S1_at--713--2831Chr10:14885654..14885678 (25 bp)
AAGTAATTCCAGTTTGACCGTGTGT
LOC_Os10g29220
Os.46819.1.S1_at--205--6851Chr10:14885665..14885689 (25 bp)
GTTTGACCGTGTGTTGTTACTACCA
LOC_Os10g29220
Os.46819.1.S1_at--589--6771Chr10:14885680..14885704 (25 bp)
GTTACTACCACTGTAACTTTACATG
LOC_Os10g29220
Os.46819.1.S1_at--554--5511Chr10:14885704..14885728 (25 bp)
GAAAAAATTACTTCTTGATTTGGAT
LOC_Os10g29220
Target Sequence 
GTTAGGATGCTGGTGCCTCCACTGAGTTATGCTTAATTAGTACTATGTTCTAGCATGTGGTTTAGAGACCTTTGTCATCA
CATAGTTCTCTTCTATATATTTTAGCAATGCATGGAGACTTGCTGTTGTACACCCTGTCTCGGTGTCTTGGCTTGTACTA
TCACTATCAGGCAGAGCTGCAGAGGTATATGACCTTAGTAATTCCATGAAATTTACGAGTCATGAACATCATCCTAAGGA
GGTAAAAGTAATTCCAGTTTGACCGTGTGTTGTTACTACCACTGTAACTTTACATGAAAAAATTACTTCTTGATTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis