Browse Element(s) Details


OsAffx.15781.5.S1_x_at

Description tigr:9632.m01094
TID=OsAffx.15781.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1219011/11transposase, putative
LOC_Os05g144409/11hAT family dimerisation domain containing protein
LOC_Os05g145009/11hAT family dimerisation domain containing protein
LOC_Os04g217407/11hypothetical protein
LOC_Os10g291703/11hAT family dimerisation domain containing protein, expressed
LOC_Os06g365301/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12140OsAffx.25995.1.S1_at11/114+6663496..6673025expressed protein
LOC_Os04g12150OsAffx.13784.1.S1_at11/114+6675583..6676660hypothetical protein
LOC_Os04g12160OsAffx.25996.1.S1_at11/114+6683892..6684443Aspartic proteinase nepenthesin-2 precursor, putative
LOC_Os04g12170NANA4+6686132..6688798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12180OsAffx.3774.1.S1_at11/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12180OsAffx.20742.3.S1_x_at1/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12190OsAffx.15781.5.S1_x_at11/114+6694449..6696402transposase, putative
LOC_Os04g12190OsAffx.15781.4.S1_x_at8/114+6694449..6696402transposase, putative
LOC_Os04g12200OsAffx.25997.1.S1_at10/114+6698571..6700127hypothetical protein
LOC_Os04g12210Os.31613.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12210Os.17297.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15781.5.S1_x_at--930--1111Chr04:6695896..6695920 (25 bp)
AGTGACTTCTGCAATGCTCTGCTAA
LOC_Os04g12190
OsAffx.15781.5.S1_x_at--676--5575Chr05:8176992..8177016 (25 bp)
GAAAGGTCACTTCTTTTTGTGTGAA
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--602--3534Chr05:8176711..8177135 (25 bp)
CATGCTGATATGTTTTTGGGTGTCA
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--1033--10835Chr05:8177126..8177150 (25 bp)
TTGGGTGTCATTGATAGGCAACTTC
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--312--8234Chr05:8177142..8177166 (25 bp)
GGCAACTTCAAGAGCTCAATAACAG
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--174--2171Chr04:6696209..6696233 (25 bp)
ACACGGAATTACTTAGATGCATGGC
LOC_Os04g12190
OsAffx.15781.5.S1_x_at--635--6334Chr05:8177196..8177220 (25 bp)
GATGCATGGCATCATTTAGCCCAGC
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--539--2274Chr05:8177222..8177246 (25 bp)
AAATCCTTCTCTGCTTTTAATGTTG
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--316--2714Chr05:8177258..8177282 (25 bp)
AAGCTTGCCAAGTTCTATCCTAGTG
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--181--8994Chr05:8177293..8177317 (25 bp)
TGAAGAAATGAACCAACTCCCCTTT
LOC_Os05g14500
OsAffx.15781.5.S1_x_at--794--9294Chr05:8177310..8177334 (25 bp)
TCCCCTTTCAACTGAACCGCTATAT
LOC_Os05g14500
Target Sequence 
AGTGACTTCTGCAATGCTCTGCTAAGGAGGGAGCAAGATATTGTGAATGCAATGGATCTTCTTGAGTTCACAAAGGCAGA
ACTTGATGTTTTGAGAGAAGATTGTGGATGTAAAGAATTTCTTGGAAAGGTCACTTCTTTTTGTGTGAAGCACAAAGTTA
AAGTTGTTGACATGGATGGGAAGTATAAGCCTATACAAAGATCGAGGAAATTCTTCAAAGATGCTGTTAATTACCATCGA
TTCCATGCTGATATGTTTTTGGGTGTCATTGATAGGCAACTTCAAGAGCTCAATAACAGATTTGATGAGGTAAACACGGA
ATTACTTAGATGCATGGCATCATTTAGCCCAGCCAAATCCTTCTCTGCTTTTAATGTTGACAACTTAGTTAAGCTTGCCA
AGTTCTATCCTAGTGATTTTGATGTTGAAGAAATGAACCAACTCCCCTTTCAACTGAACCGCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15781.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis