Browse Element(s) Details


OsAffx.25997.1.S1_at

Description tigr:9632.m01095
TID=OsAffx.25997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1220010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12150OsAffx.13784.1.S1_at11/114+6675583..6676660hypothetical protein
LOC_Os04g12160OsAffx.25996.1.S1_at11/114+6683892..6684443Aspartic proteinase nepenthesin-2 precursor, putative
LOC_Os04g12170NANA4+6686132..6688798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12180OsAffx.3774.1.S1_at11/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12180OsAffx.20742.3.S1_x_at1/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12190OsAffx.15781.5.S1_x_at11/114+6694449..6696402transposase, putative
LOC_Os04g12190OsAffx.15781.4.S1_x_at8/114+6694449..6696402transposase, putative
LOC_Os04g12200OsAffx.25997.1.S1_at10/114+6698571..6700127hypothetical protein
LOC_Os04g12210Os.31613.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12210Os.17297.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12220OsAffx.25998.1.S1_x_at11/114+6723575..6724569receptor-like protein kinase, putative
LOC_Os04g12220OsAffx.25998.1.S1_at11/114+6723575..6724569receptor-like protein kinase, putative
LOC_Os04g12220OsAffx.3773.1.S1_x_at4/114+6723575..6724569receptor-like protein kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25997.1.S1_at--1129--91Chr04:6700072..6700096 (25 bp)
ATTCGCTCCGTAGTTCATCACGGGC
LOC_Os04g12200
OsAffx.25997.1.S1_at--74--10551Chr04:6700059..6700083 (25 bp)
TTCATCACGGGCCTTTACGAGGCAC
LOC_Os04g12200
OsAffx.25997.1.S1_at--582--10331Chr04:6700046..6700070 (25 bp)
TTTACGAGGCACATCGGAGCACCAC
LOC_Os04g12200
OsAffx.25997.1.S1_at--784--491Chr04:6700034..6700058 (25 bp)
ATCGGAGCACCACAAGTACTTACAT
LOC_Os04g12200
OsAffx.25997.1.S1_at--961--2831Chr04:6700021..6700045 (25 bp)
AAGTACTTACATACACCCTTCGTCT
LOC_Os04g12200
OsAffx.25997.1.S1_at--676--1491NONE
AGCACGCTCCATCATCAAACAACAT
NONE
OsAffx.25997.1.S1_at--69--2211Chr04:6698919..6698943 (25 bp)
ACAACATCGGCAGGGAGAGGACACT
LOC_Os04g12200
OsAffx.25997.1.S1_at--536--6191Chr04:6698903..6698927 (25 bp)
GAGGACACTGACTACGATGACCCCA
LOC_Os04g12200
OsAffx.25997.1.S1_at--334--6311Chr04:6698888..6698912 (25 bp)
GATGACCCCACTACCATTGAATTAA
LOC_Os04g12200
OsAffx.25997.1.S1_at--815--3711Chr04:6698878..6698902 (25 bp)
CTACCATTGAATTAACCGTGTTGAG
LOC_Os04g12200
OsAffx.25997.1.S1_at--78--9011Chr04:6698871..6698895 (25 bp)
TGAATTAACCGTGTTGAGAGCTGCA
LOC_Os04g12200
Target Sequence 
ATTCGCTCCGTAGTTCATCACGGGCCTTTACGAGGCACATCGGAGCACCACAAGTACTTACATACACCCTTCGTCTCCTC
TCCCAGCCATCACAAGCACGCTCCATCATCAAACAACATCGGCAGGGAGAGGACACTGACTACGATGACCCCACTACCAT
TGAATTAACCGTGTTGAGAGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis