Browse Element(s) Details


Os.31613.1.S1_at

Description gb:AK070692.1
DB_XREF= gi:32980716
TID=Os.31613.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1158C05.17 (B1158C05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058J09, full insert sequence.
FL= gb:AK070692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g196102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g122101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g213791/11
LOC_Os08g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19580OsAffx.31811.2.S1_x_at1/1112+11412787..11414789hypothetical protein
LOC_Os12g19580OsAffx.31811.3.S1_x_at1/1112+11412787..11414789hypothetical protein
LOC_Os12g19590OsAffx.19751.1.S1_at11/1112+11417316..11426429transducin family protein, putative, expressed
LOC_Os12g19590OsAffx.19751.1.S1_s_at11/1112+11417316..11426429transducin family protein, putative, expressed
LOC_Os12g19590Os.8853.1.S1_at10/1112+11417316..11426429transducin family protein, putative, expressed
LOC_Os12g19600OsAffx.31812.1.S1_at11/1112+11429146..11429553hypothetical protein
LOC_Os12g19610Os.31613.1.S1_at2/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19610Os.48015.1.A1_x_at1/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19610Os.45173.1.S1_x_at1/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19620OsAffx.31869.3.S1_x_at1/1112+11439933..11441720retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19630OsAffx.31869.5.S1_x_at1/1112+11446271..11446762retrotransposon protein, putative, unclassified
LOC_Os12g19640Os.45173.1.S1_x_at1/1112+11447868..11451396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19650OsAffx.22699.1.S1_x_at1/1112+11454289..11456566retrotransposon protein, putative, unclassified
LOC_Os12g19650OsAffx.16111.1.S1_at1/1112+11454289..11456566retrotransposon protein, putative, unclassified
LOC_Os12g19660OsAffx.31813.1.S1_x_at11/1112+11458191..11458852hypothetical protein
LOC_Os12g19670OsAffx.31814.1.S1_at11/1112+11460310..11461970hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31613.1.S1_at--90--10031Chr01:25662084..25662108 (25 bp)
TAGACCCGTGGTAGATCAGTTCGAT
NONE
Os.31613.1.S1_at--709--391Chr01:25662098..25662122 (25 bp)
ATCAGTTCGATCTCAGCCGTTCGTT
NONE
Os.31613.1.S1_at--999--3374Chr04:6705990..6706012 (22 bp)
CAGCCGTTCGTTTTGTTTAGATTAG
LOC_Os04g12210
Os.31613.1.S1_at--507--10058Chr09:2264131..2264155 (25 bp)
TAGATTAGATCTCAGCCGTTCGTTC
NONE
Os.31613.1.S1_at--441--9391Chr01:25662147..25662171 (25 bp)
TCGTTCCGTAGACCGTTTCTGTGCA
NONE
Os.31613.1.S1_at--1097--3031NONE
AATCCGAGCCCGCTAATGCAATAAA
NONE
Os.31613.1.S1_at--513--9553Chr01:25662316..25662340 (25 bp)
TCTTAGCTCGGATTTAGGTTGTTCA
NONE
Os.31613.1.S1_at--81--10692Chr01:25662430..25662454 (25 bp)
TTGCTCTTTTATGCTTCGATTCCGA
NONE
Os.31613.1.S1_at--702--9431Chr01:25662609..25662633 (25 bp)
TCGGGTGGGAATGACCTGTTACCTT
NONE
Os.31613.1.S1_at--1013--3852Chr12:11436813..11437045 (25 bp)
CTGTTACCTTTGTTATAGCCTTTTG
LOC_Os12g19610
Os.31613.1.S1_at--530--16713Chr12:11437037..11437061 (24 bp)
AGCCTTTTGTTATTGATTACCTATA
LOC_Os12g19610
Target Sequence 
TAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTT
TCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTG
CGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCT
CGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATG
ATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAG
AAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTA
AAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCC
TTTTGTTATTGATTACCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis