Browse Element(s) Details


OsAffx.31814.1.S1_at

Description tigr:9640.m01948
TID=OsAffx.31814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1967011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19610Os.31613.1.S1_at2/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19610Os.48015.1.A1_x_at1/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19610Os.45173.1.S1_x_at1/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19620OsAffx.31869.3.S1_x_at1/1112+11439933..11441720retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19630OsAffx.31869.5.S1_x_at1/1112+11446271..11446762retrotransposon protein, putative, unclassified
LOC_Os12g19640Os.45173.1.S1_x_at1/1112+11447868..11451396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19650OsAffx.22699.1.S1_x_at1/1112+11454289..11456566retrotransposon protein, putative, unclassified
LOC_Os12g19650OsAffx.16111.1.S1_at1/1112+11454289..11456566retrotransposon protein, putative, unclassified
LOC_Os12g19660OsAffx.31813.1.S1_x_at11/1112+11458191..11458852hypothetical protein
LOC_Os12g19670OsAffx.31814.1.S1_at11/1112+11460310..11461970hypothetical protein
LOC_Os12g19680NANA12+11466338..11466616hypothetical protein
LOC_Os12g19690Os.23638.1.A1_x_at1/1112+11467615..11469811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19700Os.45173.1.S1_x_at3/1112+11470097..11480691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19700Os.45173.3.S1_x_at1/1112+11470097..11480691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19710NANA12+11481586..11481879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19720NANA12+11483743..11486535retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31814.1.S1_at--11--10071Chr12:11460967..11460991 (25 bp)
TAGTCCATCGGCTATAGACAGCCAC
LOC_Os12g19670
OsAffx.31814.1.S1_at--1152--4271Chr12:11460831..11460936 (25 bp)
CCTGCCATCCTAGTATTAGCTGATA
LOC_Os12g19670
OsAffx.31814.1.S1_at--559--4431Chr12:11460828..11460933 (25 bp)
GCCATCCTAGTATTAGCTGATATGT
LOC_Os12g19670
OsAffx.31814.1.S1_at--731--5791Chr12:11460745..11460769 (25 bp)
GACCCTAGCTCCTCTAGACGAAGAT
LOC_Os12g19670
OsAffx.31814.1.S1_at--1162--9431Chr12:11460691..11460715 (25 bp)
TCGGCTAGAGGCATCTTTAAACAAT
LOC_Os12g19670
OsAffx.31814.1.S1_at--428--6191Chr12:11460684..11460708 (25 bp)
GAGGCATCTTTAAACAATTTTGTGG
LOC_Os12g19670
OsAffx.31814.1.S1_at--1027--6631Chr12:11460660..11460684 (25 bp)
GTTGATTGTGGTTCCATTCGGGCAA
LOC_Os12g19670
OsAffx.31814.1.S1_at--403--10671Chr12:11460649..11460673 (25 bp)
TTCCATTCGGGCAAGACTTCGAGAA
LOC_Os12g19670
OsAffx.31814.1.S1_at--514--10631Chr12:11460632..11460656 (25 bp)
TTCGAGAAATTCACGCTCTGATCCC
LOC_Os12g19670
OsAffx.31814.1.S1_at--774--2351Chr12:11460537..11460561 (25 bp)
AAACAAAGATTACCCGAATGGCGAG
LOC_Os12g19670
OsAffx.31814.1.S1_at--423--6551Chr12:11460530..11460554 (25 bp)
GATTACCCGAATGGCGAGAGCGGAA
LOC_Os12g19670
Target Sequence 
TAGTCCATCGGCTATAGACAGCCACAACATTGAGGAAGAAGAAGAACCAGCAGCTCCTGCCATCCTAGTATTAGCTGATA
TGTTCTCCTTTGATATCAAGGATTATCTTGATCAAGAGGCAAAAGATGAAACAACAAGCAAGACCCTAGCTCCTCTAGAC
GAAGATGTCAAAAGAACTCTTGAAGATATATCTCATCGGCTAGAGGCATCTTTAAACAATTTTGTGGTTGATTGTGGTTC
CATTCGGGCAAGACTTCGAGAAATTCACGCTCTGATCCCGGATGATCTTTCGAACACCATCACTCCAGCTGCATACCTCG
AGCAACATCAATTCAAGCTAGAAAAAACTAAACAAAGATTACCCGAATGGCGAGAGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis