Browse Element(s) Details


OsAffx.19751.1.S1_s_at

Description tigr:9640.m01939
TID=OsAffx.19751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1959011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19580OsAffx.31811.2.S1_x_at1/1112+11412787..11414789hypothetical protein
LOC_Os12g19580OsAffx.31811.3.S1_x_at1/1112+11412787..11414789hypothetical protein
LOC_Os12g19590OsAffx.19751.1.S1_at11/1112+11417316..11426429transducin family protein, putative, expressed
LOC_Os12g19590OsAffx.19751.1.S1_s_at11/1112+11417316..11426429transducin family protein, putative, expressed
LOC_Os12g19590Os.8853.1.S1_at10/1112+11417316..11426429transducin family protein, putative, expressed
LOC_Os12g19600OsAffx.31812.1.S1_at11/1112+11429146..11429553hypothetical protein
LOC_Os12g19610Os.31613.1.S1_at2/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19610Os.48015.1.A1_x_at1/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19610Os.45173.1.S1_x_at1/1112+11434329..11439643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19620OsAffx.31869.3.S1_x_at1/1112+11439933..11441720retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19630OsAffx.31869.5.S1_x_at1/1112+11446271..11446762retrotransposon protein, putative, unclassified
LOC_Os12g19640Os.45173.1.S1_x_at1/1112+11447868..11451396retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19751.1.S1_s_at--365--6031Chr12:11417573..11417597 (25 bp)
GAGATAGAGGCAGAGGCCGTCCTAT
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--815--6491Chr12:11417575..11417599 (25 bp)
GATAGAGGCAGAGGCCGTCCTATGC
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--756--9791Chr12:11417647..11417671 (25 bp)
TAACAGCGGCATCTCCTCGAGACGT
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--491--1631Chr12:11417651..11417675 (25 bp)
AGCGGCATCTCCTCGAGACGTTTGG
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--1122--451Chr12:11417657..11417681 (25 bp)
ATCTCCTCGAGACGTTTGGGCCTCA
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--1006--3771Chr12:11417662..11417686 (25 bp)
CTCGAGACGTTTGGGCCTCAAGAAC
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--273--2491Chr12:11417684..11417708 (25 bp)
AACAGCATCCAGACCAACTTCGGCG
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--615--571Chr12:11417690..11417714 (25 bp)
ATCCAGACCAACTTCGGCGACGACT
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--372--8391Chr12:11417705..11417729 (25 bp)
GGCGACGACTACGTCTTCCAGATAG
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--28--5791Chr12:11417708..11417732 (25 bp)
GACGACTACGTCTTCCAGATAGCTT
LOC_Os12g19590
OsAffx.19751.1.S1_s_at--1132--2011Chr12:11417712..11417736 (25 bp)
ACTACGTCTTCCAGATAGCTTCTTG
LOC_Os12g19590
Target Sequence 
GAGATAGAGGCAGAGGCCGTCCTATGCATGGGGACATCCTCGCCCGCGACGTCCAACTCCTCGTCTCCAAGCCCTAACAG
CGGCATCTCCTCGAGACGTTTGGGCCTCAAGAACAGCATCCAGACCAACTTCGGCGACGACTACGTCTTCCAGATAGCTT
CTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19751.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis