Browse Element(s) Details


OsAffx.31811.3.S1_x_at

Description tigr:9633.m01017
TID=OsAffx.31811.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1152011/11Zinc knuckle family protein
LOC_Os07g190909/11Zinc knuckle family protein
LOC_Os08g163908/11Zinc knuckle family protein
LOC_Os09g070007/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g187006/11Zinc knuckle family protein
LOC_Os04g162705/11Zinc knuckle family protein
LOC_Os10g241503/11Zinc knuckle family protein, expressed
LOC_Os11g151102/11hypothetical protein
LOC_Os12g195801/11hypothetical protein
LOC_Os05g160801/11Zinc knuckle family protein
LOC_Os08g210601/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein
LOC_Os05g11500OsAffx.14638.1.S1_at11/115+6491805..6492578hypothetical protein
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31811.3.S1_x_at--92--4876Chr11:10568076..10568100 (25 bp)
GCTAGAGGTATCTCATGAGGTGATA
LOC_Os11g18700
OsAffx.31811.3.S1_x_at--90--9638Chr12:11413813..11413837 (25 bp)
TCATGAGGTGATAATTGCAACGGTA
LOC_Os12g19580
OsAffx.31811.3.S1_x_at--409--7396Chr11:10568095..10568119 (25 bp)
GTGATAATTGCAACGGTAAAATCCT
LOC_Os11g18700
OsAffx.31811.3.S1_x_at--32--2816Chr11:10568386..10568410 (25 bp)
AAGATGATCAAGAGTTCCATTACTT
LOC_Os11g18700
OsAffx.31811.3.S1_x_at--768--6698Chr11:10568399..10568422 (24 bp)
GTTCCATTACTTGCTTCAAGTGCAA
LOC_Os11g18700
OsAffx.31811.3.S1_x_at--1--2852Chr07:11298232..11298256 (25 bp)
AAGTGCAAGAAAGTGGGACATCATG
LOC_Os07g19090
OsAffx.31811.3.S1_x_at--746--10035Chr09:3392310..3392334 (25 bp)
TAGAGATTGCCCTTGGAAGAAAGGA
LOC_Os09g07000
OsAffx.31811.3.S1_x_at--95--5695Chr09:3392356..3392380 (25 bp)
GACATTCCTCACATCAAGTGCTTCA
LOC_Os09g07000
OsAffx.31811.3.S1_x_at--788--10675Chr09:3392360..3392384 (25 bp)
TTCCTCACATCAAGTGCTTCAAGTG
LOC_Os09g07000
OsAffx.31811.3.S1_x_at--501--2497Chr11:10568478..10568502 (25 bp)
AACATCAAGTGAGAGGCAAACCGGC
LOC_Os11g18700
OsAffx.31811.3.S1_x_at--742--7372Chr05:6502759..6502783 (25 bp)
GTGAGAGGCAAACCGGCAACAAACA
LOC_Os05g11520
Target Sequence 
GCTAGAGGTATCTCATGAGGTGATAATTGCAACGGTAAAATCCTANGAGCCTCATGTTCAAGTTNATCTNACTTGTNCTA
ACCCTTGTTNCNCCCAAGCAAANATNTCCCNGAGCACTATATNTGACTTGGATTGTGTAGGCAAAAGGGAGAAGCAAATN
GATCATGGACTTGTGTGNATTGCTCAACCTTCTCAAGATAACNGTGANGGCATGGTGAANAANCTTGAGNAGGGATCAAC
CGTNGCNTGCACCANGATCCATCAAAGGGATANCAAGTCCATCAATGNTNATACCAAGGNACGAAATCAAAAGATGATCA
AGAGTTCCATTACTTGCTTCAAGTGCAAGAAAGTGGGACATCATGNTAGAGATTGCCCTTGGAAGAAAGGAAATAAGTTG
AGCAAGAAGAANGACATTCCTCACATCAAGTGCTTCAAGTGCACNGAAGNGGGACACTTTGCCTCAAGGTCTCCTTGNNN
NNNNNNNNNACAATGCAAAACATCAAGTGAGAGGCAAACCGGCAACAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31811.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis