Browse Element(s) Details


Os.12980.1.S1_s_at

Description gb:AK062320.1
DB_XREF= gi:32972338
TID=Os.12980.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C09, full insert sequence.
FL= gb:AK062320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1156011/11aquaporin NIP-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12980.1.S1_s_at--671--231Chr05:6519586..6519610 (25 bp)
ATATCAGGAGCGTCCATGAACCCGG
LOC_Os05g11560
Os.12980.1.S1_s_at--229--971Chr05:6519559..6519583 (25 bp)
AGGACCATCGGACCGGCGATCATCC
LOC_Os05g11560
Os.12980.1.S1_s_at--620--311Chr05:6519525..6519549 (25 bp)
ATACCGGTATCTGGGTGTACATCGC
LOC_Os05g11560
Os.12980.1.S1_s_at--373--3931Chr05:6519500..6519524 (25 bp)
CGGCCCGGTTTTTGGCGCAGTTGCT
LOC_Os05g11560
Os.12980.1.S1_s_at--989--1231Chr05:6519482..6519506 (25 bp)
AGTTGCTGGCGCGTGGGCCTACAAT
LOC_Os05g11560
Os.12980.1.S1_s_at--615--8591Chr05:6519469..6519493 (25 bp)
TGGGCCTACAATCTTATCCGGTTCA
LOC_Os05g11560
Os.12980.1.S1_s_at--240--6751Chr05:6519449..6519473 (25 bp)
GTTCACCGACAAACCGCTAAGAGAG
LOC_Os05g11560
Os.12980.1.S1_s_at--671--4331Chr05:6519420..6519444 (25 bp)
CCATGACTGCATCCTTCATTAGAAG
LOC_Os05g11560
Os.12980.1.S1_s_at--282--3711Chr05:6519383..6519407 (25 bp)
CTAGGTCCCAGAATTGATCAGTTTT
LOC_Os05g11560
Os.12980.1.S1_s_at--774--5631Chr05:6519284..6519308 (25 bp)
GACACTGTGATTGCATAGATTTTAC
LOC_Os05g11560
Os.12980.1.S1_s_at--81--2111Chr05:6519261..6519285 (25 bp)
ACATGCTTTGGTTGGCTTGTTGTAG
LOC_Os05g11560
Target Sequence 
ATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTCGGCCGGTATACCGGTATCTGGGTGTA
CATCGCCGGCCCGGTTTTTGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAG
AGATCNCCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAA
TGTTTCCTTTTTTTTTNCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATA
GATTTTACATGCTTTGGTTGGCTTGTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12980.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis