Browse Element(s) Details


Os.57341.1.S1_at

Description gb:AK111332.1
DB_XREF= gi:32996541
TID=Os.57341.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.57341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-E05, full insert sequence.
FL= gb:AK111332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g115704/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein
LOC_Os05g11600OsAffx.26838.1.S1_at11/115+6550135..6550419hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57341.1.S1_at--971--4891Chr05:6526284..6526308 (25 bp)
GCTTCTTAAATCAGTTTCATGGCAG
LOC_Os05g11570
Os.57341.1.S1_at--237--4211Chr05:6526251..6526275 (25 bp)
CCCCTTTCTTGTAAGATCCTTGAAT
LOC_Os05g11570
Os.57341.1.S1_at--596--271Chr05:6526204..6526228 (25 bp)
ATAGTGGTGGCTACCTGAACCTTTC
LOC_Os05g11570
Os.57341.1.S1_at--813--992Chr05:6526179..6526203 (25 bp)
AGGATCTTCCTGAAAGGCAGATTGT
LOC_Os05g11570
Os.57341.1.S1_at--966--10251Chr05:6526057..6526081 (25 bp)
TTTGTTTTCTACTCATGTGCATCTG
NONE
Os.57341.1.S1_at--761--8431NONE
GGCCTTCACAAGAGATAACCCCGTA
NONE
Os.57341.1.S1_at--939--9511NONE
TAACCCCGTAGAGAGAGGTCCCAGC
NONE
Os.57341.1.S1_at--721--1031NONE
AGGTCCCAGCGTAGTGGCTTTTCTT
NONE
Os.57341.1.S1_at--147--10551NONE
TTCTTTGTTGGTCGCCTTCGATCCT
NONE
Os.57341.1.S1_at--750--4411NONE
GCCAGCGCACGAGAGTAATCAGAAA
NONE
Os.57341.1.S1_at--1085--9731NONE
TAATCAGAAAGGTCGGTGCAGCAGC
NONE
Target Sequence 
GCTTCTTAAATCAGTTTCATGGCAGAAATTTTCCCCCTTTCTTGTAAGATCCTTGAATTGGTTAGGGATTTGGGATTCAT
ATAGTGGTGGCTACCTGAACCTTTCAGGATCTTCCTGAAAGGCAGATTGTGGGAATGGATTATGTGGNTCAGAAGCTTCA
GCACAAACTGAAACTGGAATTGGGAAATTCTAGAATGCTGAGAATGTTATGAAATTGGAGAACAAATTTTGTTTTCTACT
CATGTGCATCTGATTTCAGTAAATTCTAAGATTGTGGCAATATATTATGAAGTAGTTCAAAAGCTTTAGCACAAATTAAA
AAACAAAACAACCACAAAAAACATTTGGGGGTCGGGCAAAGATTTTATCCCAAGATTTTTTGGGGGTGGTTACCGTCCGG
TACAAGTGGACAACGTGGGTCCACAGATGGGAAGGCCTTCACAAGAGATAACCCCGTAGAGAGAGGTCCCAGCGTAGTGG
CTTTTCTTTGTTGGTCGCCTTCGATCCTGTCTTCACGAGCCACCCCGCCAGCGCACGAGAGTAATCAGAAAGGTCGGTGC
AGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis