Browse Element(s) Details


OsAffx.26837.1.S1_at

Description tigr:9633.m01024
TID=OsAffx.26837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1159011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein
LOC_Os05g11600OsAffx.26838.1.S1_at11/115+6550135..6550419hypothetical protein
LOC_Os05g11610Os.55253.1.S1_at11/115+6555452..6556001expressed protein
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26837.1.S1_at--634--10811Chr05:6541190..6541214 (25 bp)
TTGTCACCTGCACCCATGAGAGCGG
LOC_Os05g11590
OsAffx.26837.1.S1_at--13--1771Chr05:6541185..6541209 (25 bp)
ACCTGCACCCATGAGAGCGGCAGAT
LOC_Os05g11590
OsAffx.26837.1.S1_at--1128--671Chr05:6541175..6541199 (25 bp)
ATGAGAGCGGCAGATCCCTCCAGTC
LOC_Os05g11590
OsAffx.26837.1.S1_at--437--1291Chr05:6541164..6541188 (25 bp)
AGATCCCTCCAGTCCAGGGATGGCG
LOC_Os05g11590
OsAffx.26837.1.S1_at--818--3371Chr05:6541135..6541159 (25 bp)
CAGCGGTGGCGGCATACGGGCTTAG
LOC_Os05g11590
OsAffx.26837.1.S1_at--754--611Chr05:6541100..6541124 (25 bp)
ATGCTCGGGAAGAGCGGATCTGCCA
LOC_Os05g11590
OsAffx.26837.1.S1_at--518--7971Chr05:6541085..6541109 (25 bp)
GGATCTGCCACCTGCGGGCTCTGGA
LOC_Os05g11590
OsAffx.26837.1.S1_at--132--4371Chr05:6541078..6541102 (25 bp)
CCACCTGCGGGCTCTGGAGTGATGA
LOC_Os05g11590
OsAffx.26837.1.S1_at--1075--9371Chr05:6541039..6541063 (25 bp)
TCGAGGGCTGCAATGACGGAGCCAA
LOC_Os05g11590
OsAffx.26837.1.S1_at--954--4751Chr05:6541033..6541057 (25 bp)
GCTGCAATGACGGAGCCAACAAGCT
LOC_Os05g11590
OsAffx.26837.1.S1_at--1130--3171Chr05:6541029..6541053 (25 bp)
CAATGACGGAGCCAACAAGCTGCCC
LOC_Os05g11590
Target Sequence 
TTGTCACCTGCACCCATGAGAGCGGCAGATCCCTCCAGTCCAGGGATGGCGGGAGCAGCGGTGGCGGCATACGGGCTTAG
GGGTAGCGGCATGCTCGGGAAGAGCGGATCTGCCACCTGCGGGCTCTGGAGTGATGACGATGATGACCTCGTCGAGGGCT
GCAATGACGGAGCCAACAAGCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis