Browse Element(s) Details


OsAffx.14641.1.S1_at

Description tigr:9633.m01027
TID=OsAffx.14641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1162011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein
LOC_Os05g11600OsAffx.26838.1.S1_at11/115+6550135..6550419hypothetical protein
LOC_Os05g11610Os.55253.1.S1_at11/115+6555452..6556001expressed protein
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein
LOC_Os05g11630OsAffx.26839.1.S1_at10/115+6570883..6573212hypothetical protein
LOC_Os05g11640OsAffx.14642.1.S1_at10/115+6583267..6584304hypothetical protein
LOC_Os05g11650OsAffx.26840.1.S1_s_at11/115+6585337..6587059expressed protein
LOC_Os05g11650OsAffx.26840.1.S1_at11/115+6585337..6587059expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14641.1.S1_at--378--4911Chr05:6561590..6561614 (25 bp)
GCTTCTGCTGCAATCGTCGGAGTCG
LOC_Os05g11620
OsAffx.14641.1.S1_at--552--3051Chr05:6561601..6561625 (25 bp)
AATCGTCGGAGTCGCTTGTTCAGGC
LOC_Os05g11620
OsAffx.14641.1.S1_at--1081--9431Chr05:6561606..6561630 (25 bp)
TCGGAGTCGCTTGTTCAGGCTGCTA
LOC_Os05g11620
OsAffx.14641.1.S1_at--919--1131Chr05:6561610..6561634 (25 bp)
AGTCGCTTGTTCAGGCTGCTAGGAT
LOC_Os05g11620
OsAffx.14641.1.S1_at--636--3491Chr05:6561621..6561645 (25 bp)
CAGGCTGCTAGGATGATGCCTGCAG
LOC_Os05g11620
OsAffx.14641.1.S1_at--1087--8851Chr05:6561634..6561658 (25 bp)
TGATGCCTGCAGGTGATCGTCCACA
LOC_Os05g11620
OsAffx.14641.1.S1_at--564--9271Chr05:6561662..6561686 (25 bp)
TCCTGTTGCTAGAACAAGCAGTGCT
LOC_Os05g11620
OsAffx.14641.1.S1_at--305--5031Chr05:6561679..6561703 (25 bp)
GCAGTGCTACTGATACAGCAGCGTC
LOC_Os05g11620
OsAffx.14641.1.S1_at--532--4851Chr05:6561684..6561708 (25 bp)
GCTACTGATACAGCAGCGTCGTCGT
LOC_Os05g11620
OsAffx.14641.1.S1_at--723--10711Chr05:6561726..6561750 (25 bp)
TTGCTCCAAGAATTCATGGCGCCGC
LOC_Os05g11620
OsAffx.14641.1.S1_at--229--4491Chr05:6561805..6561829 (25 bp)
GCCGGCGAGCTATCCAGGTGCAGGG
LOC_Os05g11620
Target Sequence 
GCTTCTGCTGCAATCGTCGGAGTCGCTTGTTCAGGCTGCTAGGATGATGCCTGCAGGTGATCGTCCACAAGCTCCTGTTG
CTAGAACAAGCAGTGCTACTGATACAGCAGCGTCGTCGTCGTCGACCTCGCAAGATTTGCTCCAAGAATTCATGGCGCCG
CCGAGGCCGATCGCCGGCAAGCCGGAGATCATCGCCGTCGTCGACATCGCCAAGCGCCGGCGAGCTATCCAGGTGCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis