Browse Element(s) Details


OsAffx.14642.1.S1_at

Description tigr:9633.m01029
TID=OsAffx.14642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1164010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein
LOC_Os05g11630OsAffx.26839.1.S1_at10/115+6570883..6573212hypothetical protein
LOC_Os05g11640OsAffx.14642.1.S1_at10/115+6583267..6584304hypothetical protein
LOC_Os05g11650OsAffx.26840.1.S1_s_at11/115+6585337..6587059expressed protein
LOC_Os05g11650OsAffx.26840.1.S1_at11/115+6585337..6587059expressed protein
LOC_Os05g11660NANA5+6594337..6594845hypothetical protein
LOC_Os05g11670NANA5+6600232..6602141transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11680NANA5+6603986..6606054retrotransposon, putative, centromere-specific
LOC_Os05g11690Os.45902.1.A1_x_at4/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_at3/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.45976.1.S1_x_at2/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.727.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690Os.10263.1.S1_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11690OsAffx.22442.1.S1_x_at1/115+6607431..6613395transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14642.1.S1_at--1088--9251Chr05:6583306..6583330 (25 bp)
TCCGTAACGGCGATGGAACTGGTCC
LOC_Os05g11640
OsAffx.14642.1.S1_at--777--9691Chr05:6583351..6583375 (25 bp)
TCACTGCCAGTGACTGACTTCGAGG
LOC_Os05g11640
OsAffx.14642.1.S1_at--1145--5651NONE
GAGTTCTCCCCGATTTGTTTGTCCA
NONE
OsAffx.14642.1.S1_at--624--10271Chr05:6584015..6584039 (25 bp)
TTTGCTCCCAGATGCATTCTCTCAA
LOC_Os05g11640
OsAffx.14642.1.S1_at--570--9531Chr05:6584034..6584058 (25 bp)
TCTCAATTCTTTTCATTCGCTGCAT
LOC_Os05g11640
OsAffx.14642.1.S1_at--263--9331Chr05:6584050..6584074 (25 bp)
TCGCTGCATGCCCTACCTTGTATGG
LOC_Os05g11640
OsAffx.14642.1.S1_at--96--10291Chr05:6584103..6584127 (25 bp)
TTTGCTGCTGATTTGCTCCAATGCA
LOC_Os05g11640
OsAffx.14642.1.S1_at--64--10731Chr05:6584115..6584139 (25 bp)
TTGCTCCAATGCATGTGTTCAGCTT
LOC_Os05g11640
OsAffx.14642.1.S1_at--108--7431Chr05:6584129..6584150 (22 bp)
GTGTTCAGCTTTTGTGCACAGGATC
LOC_Os05g11640
OsAffx.14642.1.S1_at--665--3311Chr05:6584145..6584218 (25 bp)
CACAGGATCACCCTCATGAACTTGA
LOC_Os05g11640
OsAffx.14642.1.S1_at--655--7651Chr05:6584238..6584262 (25 bp)
GGGATGGACCATTGCAAATTTGCCA
LOC_Os05g11640
Target Sequence 
TCCGTAACGGCGATGGAACTGGTCCCCCTGCCCGCGCCGTCGCCATCACTGCCAGTGACTGACTTCGAGGAGTTCTCCCC
GATTTGTTTGTCCACCCAGCCAGCCTTTTTGCTCCCAGATGCATTCTCTCAATTCTTTTCATTCGCTGCATGCCCTACCT
TGTATGGGGTTCATGTGCACACATTTGCATGTGTTTTTGCTGCTGATTTGCTCCAATGCATGTGTTCAGCTTTTGTGCAC
AGGATCACCCTCATGAACTTGAGGGCAAAAATAGTGATATTGGGATGGACCATTGCAAATTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis