Browse Element(s) Details


OsAffx.26839.1.S1_at

Description tigr:9633.m01028
TID=OsAffx.26839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1163010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11600OsAffx.26838.1.S1_at11/115+6550135..6550419hypothetical protein
LOC_Os05g11610Os.55253.1.S1_at11/115+6555452..6556001expressed protein
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein
LOC_Os05g11630OsAffx.26839.1.S1_at10/115+6570883..6573212hypothetical protein
LOC_Os05g11640OsAffx.14642.1.S1_at10/115+6583267..6584304hypothetical protein
LOC_Os05g11650OsAffx.26840.1.S1_s_at11/115+6585337..6587059expressed protein
LOC_Os05g11650OsAffx.26840.1.S1_at11/115+6585337..6587059expressed protein
LOC_Os05g11660NANA5+6594337..6594845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26839.1.S1_at--1091--3891Chr05:6570933..6570984 (25 bp)
CTGGTGCCTAGGTGCAGCAGTGCAT
LOC_Os05g11630
OsAffx.26839.1.S1_at--250--1131Chr05:6570978..6571002 (25 bp)
AGTGCATCTCGGAGGCTCGGATTAT
LOC_Os05g11630
OsAffx.26839.1.S1_at--529--7391Chr05:6571010..6571034 (25 bp)
GTGATGCGAGCAAACGTGACATGAA
LOC_Os05g11630
OsAffx.26839.1.S1_at--346--5511Chr05:6571067..6571091 (25 bp)
GAAAAGCTGCGATTACTGGAATTGA
LOC_Os05g11630
OsAffx.26839.1.S1_at--382--8291Chr05:6571125..6571149 (25 bp)
GGCTTGGAGCACACAGAGATGGACT
LOC_Os05g11630
OsAffx.26839.1.S1_at--687--1631NONE
AGCGTGCGGACGAATGGCTTTTCCC
NONE
OsAffx.26839.1.S1_at--539--851Chr05:6572225..6572249 (25 bp)
ATGGCTTTTCCCTCATAATTCATGC
LOC_Os05g11630
OsAffx.26839.1.S1_at--1001--10531Chr05:6572243..6572267 (25 bp)
TTCATGCCACTTTGCTGAATTGGTT
LOC_Os05g11630
OsAffx.26839.1.S1_at--246--151Chr05:6572268..6572604 (25 bp)
ATTATGCCAGAAATGTTGCGTGATC
LOC_Os05g11630
OsAffx.26839.1.S1_at--745--4651Chr05:6572597..6572621 (25 bp)
GCGTGATCTTGTGTTTCAGTTCAAT
LOC_Os05g11630
OsAffx.26839.1.S1_at--1000--3071Chr05:6572625..6572804 (25 bp)
AATACAGTTCACAGGCAATGGACTA
LOC_Os05g11630
Target Sequence 
CTGGTGCCTAGGTGCAGCAGTGCATCTCGGAGGCTCGGATTATGTTGAGGGTGATGCGAGCAAACGTGACATGAAGAATG
ACATGAAGTTGATGAAGAAGAAAGAGGGAAAAGCTGCGATTACTGGAATTGATCAGGCTTGGAGCACACAGAGATGGACT
AAGTCGAAGAAGAGAAAATGGAAGCGTGCGGACGAATGGCTTTTCCCTCATAATTCATGCCACTTTGCTGAATTGGTTAT
TATGCCAGAAATGTTGCGTGATCTTGTGTTTCAGTTCAATGCAAATACAGTTCACAGGCAATGGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis