Browse Element(s) Details


OsAffx.26838.1.S1_at

Description tigr:9633.m01025
TID=OsAffx.26838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1160011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein
LOC_Os05g11600OsAffx.26838.1.S1_at11/115+6550135..6550419hypothetical protein
LOC_Os05g11610Os.55253.1.S1_at11/115+6555452..6556001expressed protein
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein
LOC_Os05g11630OsAffx.26839.1.S1_at10/115+6570883..6573212hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26838.1.S1_at--601--431Chr05:6550362..6550386 (25 bp)
ATCTTGTTGATGCTTCTGCTGGCGT
LOC_Os05g11600
OsAffx.26838.1.S1_at--441--9591Chr05:6550361..6550385 (25 bp)
TCTTGTTGATGCTTCTGCTGGCGTC
LOC_Os05g11600
OsAffx.26838.1.S1_at--25--10791Chr05:6550356..6550380 (25 bp)
TTGATGCTTCTGCTGGCGTCTTCTG
LOC_Os05g11600
OsAffx.26838.1.S1_at--945--6331Chr05:6550354..6550378 (25 bp)
GATGCTTCTGCTGGCGTCTTCTGCA
LOC_Os05g11600
OsAffx.26838.1.S1_at--344--9491Chr05:6550348..6550372 (25 bp)
TCTGCTGGCGTCTTCTGCATCCACA
LOC_Os05g11600
OsAffx.26838.1.S1_at--313--8371Chr05:6550342..6550366 (25 bp)
GGCGTCTTCTGCATCCACACTGCAA
LOC_Os05g11600
OsAffx.26838.1.S1_at--198--591Chr05:6550330..6550354 (25 bp)
ATCCACACTGCAAGCTAGGATGATA
LOC_Os05g11600
OsAffx.26838.1.S1_at--492--2171Chr05:6550326..6550350 (25 bp)
ACACTGCAAGCTAGGATGATAAGAA
LOC_Os05g11600
OsAffx.26838.1.S1_at--1039--9771Chr05:6550307..6550331 (25 bp)
TAAGAAGCTTGAGTAGTGATGAACA
LOC_Os05g11600
OsAffx.26838.1.S1_at--1114--2211Chr05:6550285..6550309 (25 bp)
ACAAGATCATTTGATGGCAGCCATG
LOC_Os05g11600
OsAffx.26838.1.S1_at--1002--1271Chr05:6550282..6550306 (25 bp)
AGATCATTTGATGGCAGCCATGGCG
LOC_Os05g11600
Target Sequence
ATCTTGTTGATGCTTCTGCTGGCGTCTTCTGCATCCACACTGCAAGCTAGGATGATAAGAAGCTTGAGTAGTGATGAACA
AGATCATTTGATGGCAGCCATGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis