Browse Element(s) Details


Os.55253.1.S1_at

Description gb:AK107740.1
DB_XREF= gi:32992949
TID=Os.55253.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-G08, full insert sequence.
FL= gb:AK107740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1161011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein
LOC_Os05g11600OsAffx.26838.1.S1_at11/115+6550135..6550419hypothetical protein
LOC_Os05g11610Os.55253.1.S1_at11/115+6555452..6556001expressed protein
LOC_Os05g11620OsAffx.14641.1.S1_at11/115+6561447..6561913expressed protein
LOC_Os05g11630OsAffx.26839.1.S1_at10/115+6570883..6573212hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55253.1.S1_at--243--8731Chr05:6555526..6555550 (25 bp)
TGTCTCTTCAGATCATTATCCAATA
LOC_Os05g11610
Os.55253.1.S1_at--163--571Chr05:6555587..6555611 (25 bp)
ATCCTGTTCGTGCTCATCTTCTTGG
LOC_Os05g11610
Os.55253.1.S1_at--1069--9471Chr05:6555625..6555649 (25 bp)
TCTGCAGGCCAGGATGTTGCCGAGT
LOC_Os05g11610
Os.55253.1.S1_at--242--6291Chr05:6555637..6555661 (25 bp)
GATGTTGCCGAGTGATGTTCATGAT
LOC_Os05g11610
Os.55253.1.S1_at--303--4751Chr05:6555688..6555712 (25 bp)
GCTGAGTGCAGTTTCTTCAAACCCT
LOC_Os05g11610
Os.55253.1.S1_at--1144--1191Chr05:6555697..6555721 (25 bp)
AGTTTCTTCAAACCCTACTGCTAGC
LOC_Os05g11610
Os.55253.1.S1_at--932--9911Chr05:6555712..6555736 (25 bp)
TACTGCTAGCACTACTGTCGATTCG
LOC_Os05g11610
Os.55253.1.S1_at--59--1971Chr05:6555725..6555749 (25 bp)
ACTGTCGATTCGCTAGCACTCATGG
LOC_Os05g11610
Os.55253.1.S1_at--327--5171Chr05:6555780..6555804 (25 bp)
GCAAGCCGGAGATGATGCCTGCCGT
LOC_Os05g11610
Os.55253.1.S1_at--386--4531Chr05:6555852..6555876 (25 bp)
GCCCGGGCATAGGAAACTGAACTTT
LOC_Os05g11610
Os.55253.1.S1_at--931--5471Chr05:6555870..6555894 (25 bp)
GAACTTTTTGGCATATACTGTATCT
LOC_Os05g11610
Target Sequence 
TGTCTCTTCAGATCATTATCCAATAATGGCATCCTCCTCACTACACTGTCACTCGACGACCATCCTGTTCGTGCTCATCT
TCTTGGCGTCCTCGTCGTCTCTGCAGGCCAGGATGTTGCCGAGTGATGTTCATGATGATGATAATAATGTTCATGTCAAG
GAGCTGAGTGCAGTTTCTTCAAACCCTACTGCTAGCACTACTGTCGATTCGCTAGCACTCATGGCGCCGCCGCCGCCGCC
GCCGCCGGCCGCCGGCAAGCCGGAGATGATGCCTGCCGTCGACGGCAAGCGTTGGGGGACGGCCCAGCTGCAGGGCTCGG
TGCCCAGCCCGGGCATAGGAAACTGAACTTTTTGGCATATACTGTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis