Browse Element(s) Details


OsAffx.26836.1.S1_at

Description tigr:9633.m01020
TID=OsAffx.26836.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Major intrinsic protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g115609/11aquaporin NIP-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26836.1.S1_at--443--7311NONE
GTGCTCTTTGCTGGGCCAATATCAG
NONE
OsAffx.26836.1.S1_at--1070--4811NONE
GCTCTTTGCTGGGCCAATATCAGGA
NONE
OsAffx.26836.1.S1_at--528--5531Chr05:6519189..6519213 (25 bp)
GAAAAACATTGACACCAAATGGCTG
LOC_Os05g11560
OsAffx.26836.1.S1_at--1112--2391Chr05:6519186..6519210 (25 bp)
AAACATTGACACCAAATGGCTGTGC
LOC_Os05g11560
OsAffx.26836.1.S1_at--900--2071Chr05:6519184..6519208 (25 bp)
ACATTGACACCAAATGGCTGTGCTA
LOC_Os05g11560
OsAffx.26836.1.S1_at--752--3591Chr05:6519183..6519207 (25 bp)
CATTGACACCAAATGGCTGTGCTAG
LOC_Os05g11560
OsAffx.26836.1.S1_at--679--51Chr05:6519182..6519206 (25 bp)
ATTGACACCAAATGGCTGTGCTAGA
LOC_Os05g11560
OsAffx.26836.1.S1_at--630--10731Chr05:6519181..6519205 (25 bp)
TTGACACCAAATGGCTGTGCTAGAA
LOC_Os05g11560
OsAffx.26836.1.S1_at--969--5631Chr05:6519179..6519203 (25 bp)
GACACCAAATGGCTGTGCTAGAATT
LOC_Os05g11560
OsAffx.26836.1.S1_at--189--2171Chr05:6519178..6519202 (25 bp)
ACACCAAATGGCTGTGCTAGAATTT
LOC_Os05g11560
OsAffx.26836.1.S1_at--230--3371Chr05:6519177..6519201 (25 bp)
CACCAAATGGCTGTGCTAGAATTTT
LOC_Os05g11560
Target Sequence 
GTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTCGGCCGGTA
TACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTTGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCA
CCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATC
AGTTTTATTGTGGTAAAATGTTTCCTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATT
GACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGT
AATTATCATTCTGAAGAAAAACATTGACACCAAATGGCTGTGCTAGAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis