Browse Element(s) Details


Os.27817.1.A1_at

Description gb:AK106865.1
DB_XREF= gi:32992074
TID=Os.27817.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C11, full insert sequence.
FL= gb:AK106865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1151011/11B-box zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11470OsAffx.4303.1.S1_at11/115+6469205..6470299hypothetical protein
LOC_Os05g11479NANA5+6471649..6473302NA
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein
LOC_Os05g11500OsAffx.14638.1.S1_at11/115+6491805..6492578hypothetical protein
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
GO:0019904molecular_functionprotein domain specific binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27817.1.A1_at--656--711Chr05:6496004..6496028 (25 bp)
ATGATGATCTGTTGCCATTTCCGGC
LOC_Os05g11510
Os.27817.1.A1_at--999--6411Chr05:6496047..6496071 (25 bp)
GATCTCTCTGATTTTGAGTGCCTGA
LOC_Os05g11510
Os.27817.1.A1_at--268--6112Chr05:6496062..6496086 (25 bp)
GAGTGCCTGACATATGGGTTTCATG
LOC_Os05g11510
Os.27817.1.A1_at--167--7691Chr05:6496077..6496101 (25 bp)
GGGTTTCATGTCTAATGGGTTCTTA
LOC_Os05g11510
Os.27817.1.A1_at--59--10451Chr05:6496104..6496128 (25 bp)
TTAGCGACCCACATTAGCAGTATTG
LOC_Os05g11510
Os.27817.1.A1_at--149--7451Chr05:6496205..6496229 (25 bp)
GTGTACAGTCTATGCTCTGCAGCAT
LOC_Os05g11510
Os.27817.1.A1_at--621--5051Chr05:6496223..6496247 (25 bp)
GCAGCATCTGATTCTGATCCTGAAG
LOC_Os05g11510
Os.27817.1.A1_at--714--2771Chr05:6496278..6496302 (25 bp)
AAGAGAGGCCTCTGCTTTTTCGATG
LOC_Os05g11510
Os.27817.1.A1_at--516--6231Chr05:6496299..6496323 (25 bp)
GATGGCCGAAACTGAGATGCACCTC
LOC_Os05g11510
Os.27817.1.A1_at--282--6331Chr05:6496314..6496338 (25 bp)
GATGCACCTCGCTAATTGGTGGGCA
LOC_Os05g11510
Os.27817.1.A1_at--843--7751Chr05:6496377..6496401 (25 bp)
GGTGATGCTCTACTTTGTTCAGAAC
LOC_Os05g11510
Target Sequence 
ATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTC
ATGTCTAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCA
TTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGTACAGTCTATGCTCTGCAGCATCTGATTCTGATCCT
GAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTC
GCTAATTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27817.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis