Browse Element(s) Details


OsAffx.14638.1.S1_at

Description tigr:9633.m01015
TID=OsAffx.14638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1150011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11470OsAffx.4303.1.S1_at11/115+6469205..6470299hypothetical protein
LOC_Os05g11479NANA5+6471649..6473302NA
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein
LOC_Os05g11500OsAffx.14638.1.S1_at11/115+6491805..6492578hypothetical protein
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14638.1.S1_at--101--8611Chr05:6492295..6492319 (25 bp)
TGGTCCTTGTTCTTGACATCAACGC
LOC_Os05g11500
OsAffx.14638.1.S1_at--404--8711Chr05:6492264..6492288 (25 bp)
TGTCGCCTGGCAGCAGCTTCCGAAG
LOC_Os05g11500
OsAffx.14638.1.S1_at--278--3531Chr05:6492175..6492199 (25 bp)
CATGCCCGTCGTACACCGTGAAGAA
LOC_Os05g11500
OsAffx.14638.1.S1_at--657--7031Chr05:6492165..6492189 (25 bp)
GTACACCGTGAAGAACCTCGTCATC
LOC_Os05g11500
OsAffx.14638.1.S1_at--38--2751Chr05:6492061..6492085 (25 bp)
AAGAAGATGGCGTCTTCCATCTCCC
LOC_Os05g11500
OsAffx.14638.1.S1_at--994--10691Chr05:6491969..6491993 (25 bp)
TTGCCCTCTCAGAACAGTGCATTTC
LOC_Os05g11500
OsAffx.14638.1.S1_at--241--3311Chr05:6491938..6491962 (25 bp)
CACTATCCCCAATTGTTTTGGCCTA
LOC_Os05g11500
OsAffx.14638.1.S1_at--27--8771Chr05:6491925..6491949 (25 bp)
TGTTTTGGCCTACACCACCAACAGG
LOC_Os05g11500
OsAffx.14638.1.S1_at--432--4291Chr05:6491870..6491894 (25 bp)
CCTCGTCAAGGTCCAATCGTTGTTG
LOC_Os05g11500
OsAffx.14638.1.S1_at--562--8811Chr05:6491850..6491874 (25 bp)
TGTTGGAGTCGTTTTCCCTAACTCG
LOC_Os05g11500
OsAffx.14638.1.S1_at--36--6791Chr05:6491840..6491864 (25 bp)
GTTTTCCCTAACTCGGGTGCAGCTG
LOC_Os05g11500
Target Sequence 
TGGTCCTTGTTCTTGACATCAACGCCATCGCTGTCGCCTGGCAGCAGCTTCCGAAGTCGCACCTCCTCCGTGAGCACCAC
GTGCATCCGCTTCCGGCACACCTCTGCACGTGGGACCCGCCATGCCCGTCGTACACCGTGAAGAACCTCGTCATCCTCCT
CCTTGCTATCCTCTTCCACGTCGCCGCTCCCTTCCATCGCCGCCTCCTTCGCGGCGGCCAAGAATGGCGCCACAAAGAAG
ATGGCGTCTTCCATCTCCCTCTGGTGCCCGACCACCGACACCGTCCCATGGAACACGCACGTCGGCCATCTCCTTGTTTC
GTCGCCTTGCCCTCTCAGAACAGTGCATTTCCACCGCCACTATCCCCAATTGTTTTGGCCTACACCACCAACAGGCTCCC
CGAAATCCGGCGACCCCATTCCATCCCTCGTCAAGGTCCAATCGTTGTTGGAGTCGTTTTCCCTAACTCGGGTGCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis