Browse Element(s) Details


Os.26733.1.S1_at

Description gb:AK065193.1
DB_XREF= gi:32975211
TID=Os.26733.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBa0073D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E12, full insert sequence.
FL= gb:AK065193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g292747/11expressed protein
LOC_Os08g155904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26733.1.S1_at--396--8616Chr10:21585952..21585975 (24 bp)
TGGTGCTTCATCTTTAGATTGTAAT
NONE
Os.26733.1.S1_at--24--7452Chr10:14900153..14900177 (25 bp)
GTGTAAGAGTTTTGTTCTCAGCAGA
LOC_Os10g29274
Os.26733.1.S1_at--103--6812Chr10:14900145..14900169 (25 bp)
GTTTTGTTCTCAGCAGAATCTGTAC
LOC_Os10g29274
Os.26733.1.S1_at--358--5253Chr10:14900130..14900154 (25 bp)
GAATCTGTACAACGATGTATGCAAA
LOC_Os10g29274
Os.26733.1.S1_at--235--2452Chr10:14900108..14900132 (25 bp)
AAAATTACTCATCAACAGCATCCCC
LOC_Os10g29274
Os.26733.1.S1_at--559--3272Chr10:14900096..14900120 (25 bp)
CAACAGCATCCCCTGCAAATGTATT
LOC_Os10g29274
Os.26733.1.S1_at--304--3291Chr10:14900081..14900105 (25 bp)
CAAATGTATTCGTGGGTTTTCTCCT
LOC_Os10g29274
Os.26733.1.S1_at--699--10211Chr10:14900075..14900099 (25 bp)
TATTCGTGGGTTTTCTCCTTACATA
NONE
Os.26733.1.S1_at--936--3991Chr10:14900071..14900095 (25 bp)
CGTGGGTTTTCTCCTTACATAATCA
NONE
Os.26733.1.S1_at--148--7691Chr10:14900068..14900092 (25 bp)
GGGTTTTCTCCTTACATAATCATTG
NONE
Os.26733.1.S1_at--111--10594Chr10:21585991..21586092 (25 bp)
TTCTCCTTACATAATCATTGATTCA
NONE
Target Sequence 
TGGTGCTTCATCTTTAGATTGTAATGTGTAAGAGTTTTGTTCTCAGCAGAATCTGTACAACGATGTATGCAAAATTACTC
ATCAACAGCATCCCCTGCAAATGTATTCGTGGGTTTTCTCCTTACATAATCATTGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis