Browse Element(s) Details


OsAffx.20322.1.S1_at

Description tigr:9638.m02499
TID=OsAffx.20322.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2930010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20322.1.S1_at--666--5151Chr10:14915006..14915030 (25 bp)
GCAAGCGTCCGAGACAGAGCCCGAG
LOC_Os10g29300
OsAffx.20322.1.S1_at--833--911Chr10:14914977..14915001 (25 bp)
AGGCTCCCAAGCGTGTTTGCGGGTT
LOC_Os10g29300
OsAffx.20322.1.S1_at--477--771Chr10:14914923..14914947 (25 bp)
ATGTCGTTGGACAAGCAGCTACGTC
LOC_Os10g29300
OsAffx.20322.1.S1_at--644--8431Chr10:14914882..14914902 (21 bp)
GGCCTACCCGAACATCTCCTGAAGG
LOC_Os10g29300
OsAffx.20322.1.S1_at--1044--2491NONE
AACATCTCCTGAAGGGCTCCCTCTT
NONE
OsAffx.20322.1.S1_at--628--2851Chr10:14914226..14914250 (25 bp)
AAGTCGTGGCCGCTGCAGACCTGCT
LOC_Os10g29300
OsAffx.20322.1.S1_at--246--1131Chr10:14914184..14914208 (25 bp)
AGTGCTCATATCACTGTGCGGTGCT
LOC_Os10g29300
OsAffx.20322.1.S1_at--152--9531Chr10:14914125..14914149 (25 bp)
TCTACTCAGCTTCCGCGAAGTGGTG
LOC_Os10g29300
OsAffx.20322.1.S1_at--530--3631Chr10:14914116..14914140 (25 bp)
CTTCCGCGAAGTGGTGATGGCAGCA
LOC_Os10g29300
OsAffx.20322.1.S1_at--122--2891Chr10:14914074..14914098 (25 bp)
AAGGGTGTTCCAACATTGGTGGCGT
LOC_Os10g29300
OsAffx.20322.1.S1_at--681--2511Chr10:14914063..14914087 (25 bp)
AACATTGGTGGCGTGTTGCCACCGT
LOC_Os10g29300
Target Sequence 
GCAAGCGTCCGAGACAGAGCCCGAGGAGGAGGCTCCCAAGCGTGTTTGCGGGTTTAGCGGCGATGATGACGGCGGAGGAT
GGCATGTCGTTGGACAAGCAGCTACGTCGGTGGTGGTGGCAGGACGCCGGCCTACCCGAACATCTCCTGAAGGGCTCCCT
CTTCCACCAAGTCGTGGCCGCTGCAGACCTGCTAGCCCCCGTCCTGAAGCAGTGCTCATATCACTGTGCGGTGCTCCCCA
ACCTCTGCCACAACCTTCCTCACCACGCCTCTACTCAGCTTCCGCGAAGTGGTGATGGCAGCAGCAGTGGTGTGGGGGCG
AAGGGTGTTCCAACATTGGTGGCGTGTTGCCACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis