Browse Element(s) Details


Os.46456.1.S1_at

Description gb:AK100213.1
DB_XREF= gi:32985422
TID=Os.46456.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044C16, full insert sequence.
FL= gb:AK100213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2931011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46456.1.S1_at--324--7491Chr10:14916602..14916626 (25 bp)
GTGGGCACGGTATCTAACATCCTGG
LOC_Os10g29310
Os.46456.1.S1_at--151--10491Chr10:14916671..14916695 (25 bp)
TTCAATTTTCTTGGGTCACCGGCGA
LOC_Os10g29310
Os.46456.1.S1_at--650--2711Chr10:14916728..14916752 (25 bp)
AAGCATCTTTCCAAGATTTGCCCCT
LOC_Os10g29310
Os.46456.1.S1_at--162--5371Chr10:14916761..14916785 (25 bp)
GAAGAGCTGGTTGTCGTACTGGCAC
LOC_Os10g29310
Os.46456.1.S1_at--1005--3471Chr10:14916789..14916813 (25 bp)
CAGGTTCCAGCTAGTCATGCTTAGT
LOC_Os10g29310
Os.46456.1.S1_at--961--3511Chr10:14916804..14916828 (25 bp)
CATGCTTAGTGACCTCTAGTGTTCA
LOC_Os10g29310
Os.46456.1.S1_at--451--8311Chr10:14916896..14916920 (25 bp)
GGCTACTGTTCTTTTATGCAGGCAT
LOC_Os10g29310
Os.46456.1.S1_at--362--653Chr10:14921602..14921626 (25 bp)
ATGCAGCTGAACTCCCTGTGTTTAG
NONE
Os.46456.1.S1_at--480--8952Chr10:14921633..14921657 (25 bp)
TGACTACATCATCTATCCTAAGCAG
NONE
Os.46456.1.S1_at--827--1171Chr10:14917005..14917029 (25 bp)
AGTACTTCCACTTCATATCTGTTTT
LOC_Os10g29310
Os.46456.1.S1_at--554--251Chr10:14917038..14917062 (25 bp)
ATATCTCTGCAGCTTCATTATTCAA
LOC_Os10g29310
Target Sequence 
GTGGGCACGGTATCTAACATCCTGGCGCTGGCTGATCAGCACCACTGTGACGGGCTGAAGAAAGCGTGCTTCAATTTTCT
TGGGTCACCGGCGAACCTGAGTGCTGTCGTCGCCGGTGATGGCTTCAAGCATCTTTCCAAGATTTGCCCCTCTCTTATGG
AAGAGCTGGTTGTCGTACTGGCACTTCCAGGTTCCAGCTAGTCATGCTTAGTGACCTCTAGTGTTCATGTGTTATTGCAA
TGGCTAATGGTAGATTTTTGGTTTCTGAATCTGAACCTTTGTCATCAGGTAGTTGGCTACTGTTCTTTTATGCAGGCATG
CAGCTGAACTCCCTGTGTTTAGGCCTTTTATCATGTATATATGAAATTATGACTACATCATCTATCCTAAGCAGAAATTA
GAAAGTACTTCCACTTCATATCTGTTTTTTTTTTTTAATATCTCTGCAGCTTCATTATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis