Browse Element(s) Details


OsAffx.30586.1.S1_at

Description tigr:9638.m02506
TID=OsAffx.30586.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2937011/11speckle-type POZ protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30586.1.S1_at--367--3331Chr10:14937577..14937601 (25 bp)
CACTGACTCGTTGCCTGAGTTGGAG
LOC_Os10g29370
OsAffx.30586.1.S1_at--1108--8891Chr10:14937430..14937454 (25 bp)
TGAGATGTGGTCACCATTGCTCGTA
LOC_Os10g29370
OsAffx.30586.1.S1_at--680--9671Chr10:14937420..14937444 (25 bp)
TCACCATTGCTCGTAGCGGCAGATA
LOC_Os10g29370
OsAffx.30586.1.S1_at--790--4691Chr10:14937405..14937429 (25 bp)
GCGGCAGATAGGTACGATCTCCAGA
LOC_Os10g29370
OsAffx.30586.1.S1_at--799--5051Chr10:14937332..14937356 (25 bp)
GCACGGTGGCCGATAATCTTGGGCT
LOC_Os10g29370
OsAffx.30586.1.S1_at--1085--9751Chr10:14937319..14937343 (25 bp)
TAATCTTGGGCTCGCTGAGAAGCAG
LOC_Os10g29370
OsAffx.30586.1.S1_at--358--1451Chr10:14937302..14937326 (25 bp)
AGAAGCAGCATTGCCGTCTGCTGAA
LOC_Os10g29370
OsAffx.30586.1.S1_at--28--10851Chr10:14937267..14937291 (25 bp)
TTGGAGTTCCTCAAAGCTCCGGCGA
LOC_Os10g29370
OsAffx.30586.1.S1_at--910--2351Chr10:14937255..14937279 (25 bp)
AAAGCTCCGGCGAATTTGAAGGTTG
LOC_Os10g29370
OsAffx.30586.1.S1_at--132--9931Chr10:14937230..14937254 (25 bp)
TACTGGCGAGTGACGGCTTGGATCA
LOC_Os10g29370
OsAffx.30586.1.S1_at--859--4931Chr10:14937215..14937239 (25 bp)
GCTTGGATCACATAACTGCAACCTG
LOC_Os10g29370
Target Sequence 
CACTGACTCGTTGCCTGAGTTGGAGGACGAAGAGGAAACTGAATCCGATCGAGATGAAGAAGAAGATCAGGAGAGTGAAG
CAGATGGAGTACACGGAGAAGATTACGATGACGATGACGATGATGATGATGATGACAATGGTGGTGATGAGATGTGGTCA
CCATTGCTCGTAGCGGCAGATAGGTACGATCTCCAGAGGCTGAAGCTGATATGCGCGAAGAAGCTGTGCGAGCGGATCGA
TGCGAGCACGGTGGCCGATAATCTTGGGCTCGCTGAGAAGCAGCATTGCCGTCTGCTGAAGGAGGCGTGCTTGGAGTTCC
TCAAAGCTCCGGCGAATTTGAAGGTTGTACTGGCGAGTGACGGCTTGGATCACATAACTGCAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis