Browse Element(s) Details


OsAffx.30585.1.S1_at

Description gb:NM_196609.1
DB_XREF= gi:37534577
TID=OsAffx.30585.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.21), mRNA.
PROD=putative speckle-type protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2933011/11BTB/POZ domain containing protein
LOC_Os10g292601/11BTB/POZ domain containing protein
LOC_Os10g293201/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30585.1.S1_at--401--1271Chr10:14927004..14927028 (25 bp)
AGATACTCCCTGTCGAAGCCTTTGT
LOC_Os10g29330
OsAffx.30585.1.S1_at--731--8613Chr10:14920999..14921071 (25 bp)
TGGTGTTCGAGTCGCCGGTCTTCAG
LOC_Os10g29320
OsAffx.30585.1.S1_at--745--4811Chr10:14927338..14927362 (25 bp)
GCTCTACAGCTCGATGAAGGAGGGT
LOC_Os10g29330
OsAffx.30585.1.S1_at--1099--7331Chr10:14927551..14927575 (25 bp)
GTGCAGCTACATTAGCGTCGACGCT
LOC_Os10g29330
OsAffx.30585.1.S1_at--912--9991Chr10:14927563..14927587 (25 bp)
TAGCGTCGACGCTGTATCGAACATC
LOC_Os10g29330
OsAffx.30585.1.S1_at--556--4131Chr10:14927572..14927596 (25 bp)
CGCTGTATCGAACATCCTGGCGCTG
LOC_Os10g29330
OsAffx.30585.1.S1_at--725--631Chr10:14927632..14927656 (25 bp)
ATGCTTTCATTTTCTGGCCTCACCG
LOC_Os10g29330
OsAffx.30585.1.S1_at--238--8451Chr10:14927646..14927670 (25 bp)
TGGCCTCACCGGGAAACCTGAATGC
LOC_Os10g29330
OsAffx.30585.1.S1_at--820--1751Chr10:14927661..14927685 (25 bp)
ACCTGAATGCTGTCATCACCAGTGA
LOC_Os10g29330
OsAffx.30585.1.S1_at--327--391Chr10:14927675..14927699 (25 bp)
ATCACCAGTGATGGCCTCAAGCATC
LOC_Os10g29330
OsAffx.30585.1.S1_at--1117--8871Chr10:14927683..14927707 (25 bp)
TGATGGCCTCAAGCATCTGAGCAGG
LOC_Os10g29330
Target Sequence 
AGATACTCCCTGTCGAAGCCTTTGTGTCCGTGCCCCCATCCGACATGAACCAGCAGTTCGGCGACCTGCTGGAGACCGAG
AAGGGCGCTGACGTGGTGTTCGAGTCGCCGGTCTTCAGAGCGGAGCTCTACAGCTCGATGAAGGAGGGTGACACTGCTGG
AGTCGTGCGCATCGAAGACATGGAGGCGCAGGTGTTCAAGCTGCTGCTCCGCTTTGTGTACACCGACTCGTTGCCGGAGA
TGGGGAATGATGATGAAGACGTCATGTGCCAGCATCTGCTCGTCGCGGCGGACCGGTACAACCTGGAGAGGCTCAAGTTG
ATCTACGAGGAGAAGTTGTGCAGCTACATTAGCGTCGACGCTGTATCGAACATCCTGGCGCTGGCTGATCAGCACCACTG
CGACGGGCTGAAGAAAGCATGCTTTCATTTTCTGGCCTCACCGGGAAACCTGAATGCTGTCATCACCAGTGATGGCCTCA
AGCATCTGAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis