Browse Element(s) Details


OsAffx.8105.1.S1_at

Description tigr:9638.m02504
TID=OsAffx.8105.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2935010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8105.1.S1_at--974--4192Chr10:14932804..14932828 (25 bp)
CCCGGTGTGTAGGTCAGGTCATGCT
LOC_Os10g29350
OsAffx.8105.1.S1_at--1162--9611Chr10:14932822..14932846 (25 bp)
TCATGCTGGCACGATTGACCTTGGC
LOC_Os10g29350
OsAffx.8105.1.S1_at--173--591NONE
ATGCCCGGGCCAGAGTGCAAAAGGA
NONE
OsAffx.8105.1.S1_at--985--5951Chr10:14933964..14933988 (25 bp)
GAGAATTTCTTGACTCCAATTGTCC
LOC_Os10g29350
OsAffx.8105.1.S1_at--656--9191Chr10:14933978..14934001 (24 bp)
TCCAATTGTCCAAACGAACCGTGTT
LOC_Os10g29350
OsAffx.8105.1.S1_at--144--6211Chr10:14934197..14934221 (25 bp)
GAGGCATGACAAAACCCCACGAGAT
LOC_Os10g29350
OsAffx.8105.1.S1_at--928--91Chr10:14934220..14934244 (25 bp)
ATTCCCATCGGTTTCATTGTTTCAA
LOC_Os10g29350
OsAffx.8105.1.S1_at--668--10671Chr10:14934236..14934260 (25 bp)
TTGTTTCAAACTCCGCCGTAATAAG
LOC_Os10g29350
OsAffx.8105.1.S1_at--683--871Chr10:14934293..14934317 (25 bp)
ATGGCCTATTCATCTACACGACATG
LOC_Os10g29350
OsAffx.8105.1.S1_at--727--2131Chr10:14934367..14934391 (25 bp)
ACAGTGTCACATGTAGTGGACTCCA
LOC_Os10g29350
OsAffx.8105.1.S1_at--956--1092Chr10:14934381..14934405 (25 bp)
AGTGGACTCCATCATCAACATGTGC
LOC_Os10g29350
Target Sequence 
CCCGGTGTGTAGGTCAGGTCATGCTGGCACGATTGACCTTGGCCCAGGCCCTATTGTGCCTGGGCCATGCCCGGGCCAGA
GTGCAAAAGGAGGAAATAGGACGGAGAAATTAACGGATGAGAATTTCTTGACTCCAATTGTCCAAACGAACCGTGTTTTT
AGTTTTACCTTTGAGAGGATTATTTTTACTTTCCCTTTATTTCCTGGAGGCCCAGTAACCAACAGAGGCATGACAAAACC
CCACGAGATTCCCATCGGTTTCATTGTTTCAAACTCCGCCGTAATAAGTCAGTGGATCAAAGAGCAGAGAAGGAACTTTG
ATGGCCTATTCATCTACACGACATGGGGTATTTGGCTCCAAAGGAATGCAAGAATTTTCAACAATGACTATGGTACAGTG
TCACATGTAGTGGACTCCATCATCAACATGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis