Browse Element(s) Details


OsAffx.16386.1.S1_x_at

Description tigr:9635.m02269
TID=OsAffx.16386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g238109/11hypothetical protein
LOC_Os10g292404/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23760NANA7+13418259..13419015hypothetical protein
LOC_Os07g23770OsAffx.5417.1.S1_at10/117+13424155..13425342hypothetical protein
LOC_Os07g23780OsAffx.28559.1.S1_at11/117+13431609..13431995hypothetical protein
LOC_Os07g23790Os.11647.2.S1_a_at11/117+13435053..13438500expressed protein
LOC_Os07g23800OsAffx.16385.1.S1_at10/117+13439437..13440756Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os07g23810OsAffx.16386.1.S1_at10/117+13441784..13444008hypothetical protein
LOC_Os07g23810OsAffx.16386.1.S1_x_at9/117+13441784..13444008hypothetical protein
LOC_Os07g23810Os.35837.2.S1_x_at8/117+13441784..13444008hypothetical protein
LOC_Os07g23820NANA7+13451734..13454998retrotransposon protein, putative, unclassified
LOC_Os07g23830NANA7+13455625..13458993retrotransposon protein, putative, unclassified
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified
LOC_Os07g23850Os.54178.1.S1_at1/117+13468705..13469514Hevamine A precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16386.1.S1_x_at--241--9052Chr07:13441979..13442003 (25 bp)
TGCAGGCGCCGTGGTGGTTCTCCTT
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--476--3972Chr07:13442012..13442036 (25 bp)
CGTCGAAGTTCACCGGAGAAGCCCG
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--258--9711Chr07:13442047..13442071 (25 bp)
TCAAACTCGCTCACCAGAGACAGAG
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--271--8011NONE
GGAGGAAGAGGAAATACATGGTTAT
NONE
OsAffx.16386.1.S1_x_at--587--6791Chr07:13442617..13442641 (25 bp)
GTTATGATGCTACCTTCAACGTGCT
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--899--432Chr07:13442654..13442678 (25 bp)
ATCTTCCCTTGGTGATGAACAACAA
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--39--1572Chr07:13443186..13443375 (25 bp)
AGCTTATTTTACATGCGCTATAAAC
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--104--6211Chr07:13443396..13443420 (25 bp)
GAGGCATCTATATCTTGATTCCATA
LOC_Os07g23810
OsAffx.16386.1.S1_x_at--956--8272Chr12:10805510..10805529 (20 bp)
GGCATCTATATCTTGATTCCATATC
NONE
OsAffx.16386.1.S1_x_at--373--10172Chr12:10805513..10805536 (24 bp)
TATCTTGATTCCATATCTCTTTTTG
NONE
OsAffx.16386.1.S1_x_at--237--3771NONE
CTCTTTTTGCTTTTGTGAACTATAT
NONE
Target Sequence 
TGCAGGCGCCGTGGTGGTTCTCCTTCCCTAACCCGTCGAAGTTCACCGGAGAAGCCCGGCCCCTTCTCTCAAACTCGCTC
ACCAGAGACAGAGAAGATGAATAAACGCGTGGAGAGGAGGAAGAGGAAATACATGGTTATGATGCTACCTTCAACGTGCT
GCTGCTGGCCTGATCTTCCCTTGGTGATGAACAACAAGATACATGGGAGAATGGCTCTGCAAGCCAACATTGTTGACAAG
GACAGAGAAGATCAAGGAGGTTGTTCCTACGAATACAAATCATGCTCAGACGCTATTAAATCAGCCACTGATTCACATAT
TCACAAAGCTTATTTTACATGCGCTATAAACTCCCCTATAAAACTTACCATGAGGCATCTATATCTTGATTCCATATCTC
TTTTTGCTTTTGTGAACTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16386.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis