Browse Element(s) Details


Os.11647.2.S1_a_at

Description gb:AK066281.1
DB_XREF= gi:32976299
TID=Os.11647.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063L01, full insert sequence.
FL= gb:AK066281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2379011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23750Os.27313.1.A1_at11/117+13403550..13410326Sterol 3-beta-glucosyltransferase, putative, expressed
LOC_Os07g23760NANA7+13418259..13419015hypothetical protein
LOC_Os07g23770OsAffx.5417.1.S1_at10/117+13424155..13425342hypothetical protein
LOC_Os07g23780OsAffx.28559.1.S1_at11/117+13431609..13431995hypothetical protein
LOC_Os07g23790Os.11647.2.S1_a_at11/117+13435053..13438500expressed protein
LOC_Os07g23800OsAffx.16385.1.S1_at10/117+13439437..13440756Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os07g23810OsAffx.16386.1.S1_at10/117+13441784..13444008hypothetical protein
LOC_Os07g23810OsAffx.16386.1.S1_x_at9/117+13441784..13444008hypothetical protein
LOC_Os07g23810Os.35837.2.S1_x_at8/117+13441784..13444008hypothetical protein
LOC_Os07g23820NANA7+13451734..13454998retrotransposon protein, putative, unclassified
LOC_Os07g23830NANA7+13455625..13458993retrotransposon protein, putative, unclassified
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11647.2.S1_a_at--372--911Chr07:13435611..13435635 (25 bp)
AGGCTCTTGCCGAATGAAGCTCCAG
LOC_Os07g23790
Os.11647.2.S1_a_at--862--5211Chr07:13435531..13435555 (25 bp)
GAATAACAGAGTGTTGCCCCGGTTT
LOC_Os07g23790
Os.11647.2.S1_a_at--993--7811Chr07:13435481..13435505 (25 bp)
GGTCAGATTGGCACCGTATCCGACG
LOC_Os07g23790
Os.11647.2.S1_a_at--378--10091Chr07:13435465..13435489 (25 bp)
TATCCGACGGCCGAGTAGACAGAGC
LOC_Os07g23790
Os.11647.2.S1_a_at--326--6211Chr07:13435430..13435454 (25 bp)
GAGGCTTGTTGAATCGACCCTACAG
LOC_Os07g23790
Os.11647.2.S1_a_at--270--2491Chr07:13435401..13435425 (25 bp)
AACAGCGACTATCATGGCTTTCGTC
LOC_Os07g23790
Os.11647.2.S1_a_at--193--7251Chr07:13435379..13435403 (25 bp)
GTCCCCAGCTATTTGATCAGCCGAA
LOC_Os07g23790
Os.11647.2.S1_a_at--869--6931Chr07:13435352..13435376 (25 bp)
GTAGTAGCCATCGTTCAGGTATCAA
LOC_Os07g23790
Os.11647.2.S1_a_at--187--691Chr07:13435316..13435340 (25 bp)
ATGACCCATCATTTGTGCCCAGACG
LOC_Os07g23790
Os.11647.2.S1_a_at--72--1411Chr07:13435296..13435320 (25 bp)
AGACGGCAGCGTTTGAGATACACCC
LOC_Os07g23790
Os.11647.2.S1_a_at--560--971Chr07:13435269..13435293 (25 bp)
AGGAGCCATCATATCCGTGATTGAT
LOC_Os07g23790
Target Sequence 
AGGCTCTTGCCGAATGAAGCTCCAGAATCATCAATAATCTGGGCAGATGAAAGGCATGGACTGCCNAAGGTTTCAGCCTC
AGAATAACAGAGTGTTGCCCCGGTTTTCGTTCACCAATAGGAGCAGCTNCACGGTCAGATTGGCACCGTATCCGACGGCC
GAGTAGACAGAGCCTAGCGCGTCGAGGCTTGTTGAATCGACCCTACAGGAACAACAGCGACTATCATGGCTTTCGTCCCC
AGCTATTTGATCAGCCGAATGGTAGTAGCCATCGTTCAGGTATCAACAGGAGCCTTGATGACCCATCATTTGTGCCCAGA
CGGCAGCGTTTGAGATACACCCACAGGAGCCATCATATCCGTGATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11647.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis