Browse Element(s) Details


OsAffx.16385.1.S1_at

Description tigr:9635.m02268
TID=OsAffx.16385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2380010/11Ribosomal protein S5, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23760NANA7+13418259..13419015hypothetical protein
LOC_Os07g23770OsAffx.5417.1.S1_at10/117+13424155..13425342hypothetical protein
LOC_Os07g23780OsAffx.28559.1.S1_at11/117+13431609..13431995hypothetical protein
LOC_Os07g23790Os.11647.2.S1_a_at11/117+13435053..13438500expressed protein
LOC_Os07g23800OsAffx.16385.1.S1_at10/117+13439437..13440756Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os07g23810OsAffx.16386.1.S1_at10/117+13441784..13444008hypothetical protein
LOC_Os07g23810OsAffx.16386.1.S1_x_at9/117+13441784..13444008hypothetical protein
LOC_Os07g23810Os.35837.2.S1_x_at8/117+13441784..13444008hypothetical protein
LOC_Os07g23820NANA7+13451734..13454998retrotransposon protein, putative, unclassified
LOC_Os07g23830NANA7+13455625..13458993retrotransposon protein, putative, unclassified
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16385.1.S1_at--870--7291Chr07:13439468..13439492 (25 bp)
GTGCGCCAAGGCAACAACGATGTCT
LOC_Os07g23800
OsAffx.16385.1.S1_at--434--771Chr07:13439487..13439511 (25 bp)
ATGTCTGGCGCAATCATTCTTGCCA
LOC_Os07g23800
OsAffx.16385.1.S1_at--1019--111Chr07:13439502..13439526 (25 bp)
ATTCTTGCCATGTTTCGTTGTGCCG
LOC_Os07g23800
OsAffx.16385.1.S1_at--538--6611Chr07:13439518..13439600 (25 bp)
GTTGTGCCGGTTGCCGACAAGTACG
LOC_Os07g23800
OsAffx.16385.1.S1_at--128--5611Chr07:13439591..13439615 (25 bp)
GACAAGTACGGCTCTGTTACTGTCC
LOC_Os07g23800
OsAffx.16385.1.S1_at--628--3771Chr07:13439602..13439626 (25 bp)
CTCTGTTACTGTCCGCATGATGTTG
LOC_Os07g23800
OsAffx.16385.1.S1_at--528--9651NONE
TCAGCAACTTCGTCAAGCATCAAAT
NONE
OsAffx.16385.1.S1_at--543--4111Chr07:13440381..13440405 (25 bp)
GCATCAAATGAAACGGGCCCTTAAT
LOC_Os07g23800
OsAffx.16385.1.S1_at--618--10491Chr07:13440401..13440425 (25 bp)
TTAATTTCCAATACAAGCCGCCGCC
LOC_Os07g23800
OsAffx.16385.1.S1_at--634--531Chr07:13440474..13440498 (25 bp)
ATCGCCGACGCGGAGCAAACGGGAT
LOC_Os07g23800
OsAffx.16385.1.S1_at--334--1291Chr07:13440557..13440581 (25 bp)
AGATCCTCCTGCTCTGTGGTTTGGT
LOC_Os07g23800
Target Sequence 
GTGCGCCAAGGCAACAACGATGTCTGGCGCAATCATTCTTGCCATGTTTCGTTGTGCCGGTTGCCGACAAGTACGGCTCT
GTTACTGTCCGCATGATGTTGCCACCCATGGGCTCCAGCGTCGTGGCGACGCGTGTGCCCAAGAAGGTGCTTAAGTTCGC
CGGCATCGAGGACGTCTTCACCTCGTCACGTGGCTCCACCAAGACCCTCAGCAACTTCGTCAAGCATCAAATGAAACGGG
CCCTTAATTTCCAATACAAGCCGCCGCCGCTGCCTCCGTTCCTGCGACAGTCTCGCCCTCCGAGACGCGGTGCGGCATCG
CCGACGCGGAGCAAACGGGATGGTAGTGGGTCAGGGGAGGGATCGTCGTTCGCCGGGCTTCCCCTCGACGCGCTGTTCGA
GATCCTCCTGCTCTGTGGTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis