Browse Element(s) Details


Os.54178.1.S1_at

Description gb:AK102369.1
DB_XREF= gi:32987578
TID=Os.54178.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091K14, full insert sequence.
FL= gb:AK102369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g279806/11Glycosyl hydrolases family 18 protein
LOC_Os07g238501/11Hevamine A precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27950Os.54006.1.S1_at11/114+16307599..16310334expressed protein
LOC_Os04g27960OsAffx.3923.1.S1_at11/114+16318382..16322121B3 DNA binding domain containing protein
LOC_Os04g27969NANA4+16329668..16330075NA
LOC_Os04g27980Os.54178.1.S1_at6/114+16332670..16333988Glycosyl hydrolases family 18 protein
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54178.1.S1_at--151--9171Chr04:16332993..16333017 (25 bp)
TGCCCGTTCCCGGACAGGATGCTGG
LOC_Os04g27980
Os.54178.1.S1_at--361--4652Chr07:13469227..13469246 (20 bp)
GCGTCCACGTCCAGTTCTACAACAA
LOC_Os07g23850
Os.54178.1.S1_at--1052--931Chr04:16332861..16332885 (25 bp)
AGGAAGTGGGCGTCCAGCCTGCCGA
LOC_Os04g27980
Os.54178.1.S1_at--681--6391Chr04:16332745..16332769 (25 bp)
GATCGTGCAGCGGTCGAGGAACTAC
LOC_Os04g27980
Os.54178.1.S1_at--258--8071Chr04:16332704..16332728 (25 bp)
GGAGCAGGTACTGGGACCGGCGCAC
LOC_Os04g27980
Os.54178.1.S1_at--380--8391Chr04:16332686..16332710 (25 bp)
GGCGCACCGGCTACAGCAAGAAGAT
LOC_Os04g27980
Os.54178.1.S1_at--956--10471NONE
TTACTGCTGACAAGATGGCCCTGCG
NONE
Os.54178.1.S1_at--1051--9111NONE
TGCTGACAAGATGGCCCTGCGATCA
NONE
Os.54178.1.S1_at--826--851Chr04:16332578..16332602 (25 bp)
ATGGCCCTGCGATCACACCTTATGT
NONE
Os.54178.1.S1_at--191--4631Chr04:16332570..16332594 (25 bp)
GCGATCACACCTTATGTGACTGTAT
NONE
Os.54178.1.S1_at--228--5371Chr04:16332524..16332548 (25 bp)
GAAGAGCATATGGATGCTAGCTTCC
NONE
Target Sequence 
TGCCCGTTCCCGGACAGGATGCTGGGCGAGGCGCTGCGCACGGGGGTGTTCGACCGCGTCCACGTCCAGTTCTACAACAA
CCCGGCCTGCAGCTACCGCGCCAGCAACGCCGCCGCGTTCGCCGCGGCGTGGAGGAAGTGGGCGTCCAGCCTGCCGAGGA
GCTCCGTCTACCTCGGGCTCCCGGCGGCGCCGGGCGCGGCGAACAGCGGGTACGTCCCGCCGGCGGCGCTGGCGGGGGAG
GCGCTGCCGATCGTGCAGCGGTCGAGGAACTACGGCGGCGTGATGCTGTGGAGCAGGTACTGGGACCGGCGCACCGGCTA
CAGCAAGAAGATAAAGCATGCCGTGTGATTGTACTACTATGTGTGCTTAATATTGGAATAAGGGTGGCCTTGCAGTAGTT
CTTACTGCTGACAAGATGGCCCTGCGATCACACCTTATGTGACTGTATAATTAGTGTGTGTTTGGGGAAGAAGAGCATAT
GGATGCTAGCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis