Browse Element(s) Details


OsAffx.14337.1.S1_x_at

Description tigr:9638.m03702
TID=OsAffx.14337.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4077010/11hypothetical protein
LOC_Os04g280101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40730Os.12234.1.S1_s_at11/1110+21529179..21531619Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40740Os.27587.1.S1_at11/1110+21533321..21535913Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g40750Os.46626.1.S1_x_at10/1110+21537078..21537836expressed protein
LOC_Os10g40770OsAffx.14337.1.S1_x_at10/1110+21549431..21550048hypothetical protein
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14337.1.S1_x_at--473--3791Chr10:21549484..21549508 (25 bp)
CTCCCTCCTCCTGGGTGACAACGAC
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--779--3591NONE
CTTGGCAACGTCTGGTGGTCGCGTC
NONE
OsAffx.14337.1.S1_x_at--69--2591Chr10:21549569..21549875 (25 bp)
AACGTCTGGTGGTCGCGTCCGCCGT
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--1037--3351Chr10:21549895..21549919 (25 bp)
CACCGCGTTGGACGCCATCGACGAA
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--693--10851Chr10:21549902..21549926 (25 bp)
TTGGACGCCATCGACGAAGCCGTCG
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--735--5411Chr10:21549917..21549941 (25 bp)
GAAGCCGTCGGCAAGCTCAAATCCG
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--1007--5151Chr10:21549927..21549951 (25 bp)
GCAAGCTCAAATCCGTCCTCGACAA
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--481--9691Chr10:21549933..21549957 (25 bp)
TCAAATCCGTCCTCGACAACGGCGA
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--996--5612Chr10:21549947..21549971 (25 bp)
GACAACGGCGAAGGCGACCTCGACG
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--1075--4132Chr10:21549978..21550002 (25 bp)
CGCTGCGGGCGGAGGAGCTGATGGC
LOC_Os10g40770
OsAffx.14337.1.S1_x_at--242--1611Chr10:21549993..21550017 (25 bp)
AGCTGATGGCGCCGCTGGAGAGCCA
LOC_Os10g40770
Target Sequence 
CTCCCTCCTCCTGGGTGACAACGACCCCTCCGACGAGTCCAGCCCGCGCCGCCCCTCCACCTTCCTCAACGCCGTCGCGC
TTGGCAACGTCTGGTGGTCGCGTCCGCCGTCCGCGTCGCCTCATGCTCCCACCGCGTTGGACGCCATCGACGAAGCCGTC
GGCAAGCTCAAATCCGTCCTCGACAACGGCGAAGGCGACCTCGACGAGGCAGCGCTGCGGGCGGAGGAGCTGATGGCGCC
GCTGGAGAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14337.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis