Browse Element(s) Details


Os.46626.1.S1_x_at

Description gb:CB624215
DB_XREF= gi:29619203
DB_XREF=OSIIEa12J07.f
CLONE=OSIIEa12J07
TID=Os.46626.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0010C11.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4075010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40720Os.6786.1.S1_a_at11/1110+21518134..21520035Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40730Os.12234.1.S1_s_at11/1110+21529179..21531619Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40740Os.27587.1.S1_at11/1110+21533321..21535913Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g40750Os.46626.1.S1_x_at10/1110+21537078..21537836expressed protein
LOC_Os10g40770OsAffx.14337.1.S1_x_at10/1110+21549431..21550048hypothetical protein
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46626.1.S1_x_at--1060--2811Chr10:21537590..21537614 (25 bp)
AAGTTCCCGCCGCATCAGCAGCTGC
LOC_Os10g40750
Os.46626.1.S1_x_at--814--9651Chr10:21537576..21537600 (25 bp)
TCAGCAGCTGCAGGCTGCCATGGGA
LOC_Os10g40750
Os.46626.1.S1_x_at--1049--4551Chr10:21537392..21537416 (25 bp)
GCGCTGGTGCCGTGCGACGCCGACG
LOC_Os10g40750
Os.46626.1.S1_x_at--578--6011Chr10:21537269..21537293 (25 bp)
GAGAGCACGCTGCTCACGCTCGACG
LOC_Os10g40750
Os.46626.1.S1_x_at--1039--8651Chr10:21537217..21537241 (25 bp)
TGTGCGGGTTCACGACGACGACCAA
LOC_Os10g40750
Os.46626.1.S1_x_at--339--7291Chr10:21537216..21537240 (25 bp)
GTGCGGGTTCACGACGACGACCAAC
LOC_Os10g40750
Os.46626.1.S1_x_at--1154--9131Chr10:21537215..21537239 (25 bp)
TGCGGGTTCACGACGACGACCAACA
LOC_Os10g40750
Os.46626.1.S1_x_at--1112--7571Chr10:21537212..21537236 (25 bp)
GGGTTCACGACGACGACCAACAACT
LOC_Os10g40750
Os.46626.1.S1_x_at--45--8411Chr10:21537119..21537143 (25 bp)
GGCGCCAGCGACTCGCGTTGCTTCA
LOC_Os10g40750
Os.46626.1.S1_x_at--299--1651Chr10:21537113..21537137 (25 bp)
AGCGACTCGCGTTGCTTCAGCCGTC
LOC_Os10g40750
Os.46626.1.S1_x_at--963--3691NONE
CTAGGATGATCACGTCGTGATCAGA
NONE
Target Sequence 
AAGTTCCCGCCGCATCAGCAGCTGCAGGCTGCCATGGGAGGGGGAGGAGGTGGCGGCGTGGTCGGGGACCGCGAGACGCT
GGAGGCGGTGGTGGGCGAGGCGGCCGCGCGGTCGTCGTCGTCGTCGCACCTCGCGGCGCGCGCGCGTCCCGTGCCCGCGC
CATGGCTCGGCAGCGTCGGGGTGGTGGCGGCGGCCGACGCGCTGGTGCCGTGCGACGCCGACGCGGCGGAGGGGCGGAGC
AAGCGGCCGCGGGAGGTGGTCGGCNAGGACGGGCGGCGCGCGTGCGCCAGCCAGGGGAGCGCCGCNCCGGGGCGCCGCGG
CGAGAGCACGCTGCTCACGCTCGACGCCTGCTGCGGCACCGCGGCCGACGACNTGTGCGGGTTCACGACGACGACCAACA
ACTCCACCTCNCTGGAGGACAGGACGGAGGACNAGGGCTCGCCNGGAGACNGGANAACACCAGCATCGCCGGCGGCGCCA
GCGACTCGCGTTGCTTCAGCCGTCNCTCGCAATCGCANNNANGNNNNNNNNGNNNCTAGGATGATCACGTCGTGATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46626.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis