Browse Element(s) Details


Os.27587.1.S1_at

Description gb:CB624216
DB_XREF= gi:29619204
DB_XREF=OSIIEa12J07.r
CLONE=OSIIEa12J07
TID=Os.27587.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-binding protein (OSJNBa0010C11.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4074011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40720Os.6786.1.S1_a_at11/1110+21518134..21520035Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40730Os.12234.1.S1_s_at11/1110+21529179..21531619Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40740Os.27587.1.S1_at11/1110+21533321..21535913Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g40750Os.46626.1.S1_x_at10/1110+21537078..21537836expressed protein
LOC_Os10g40770OsAffx.14337.1.S1_x_at10/1110+21549431..21550048hypothetical protein
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27587.1.S1_at--75--2431Chr10:21533808..21533928 (25 bp)
AAAACGCACAGCAACCGAACGGCAT
LOC_Os10g40740
Os.27587.1.S1_at--263--5011Chr10:21533787..21533811 (25 bp)
GCATGGAGGCGTACAACCGGATGAT
LOC_Os10g40740
Os.27587.1.S1_at--602--2731Chr10:21533711..21533735 (25 bp)
AAGCAACTCCAGACAATGATCGTGA
LOC_Os10g40740
Os.27587.1.S1_at--161--6371Chr10:21533694..21533718 (25 bp)
GATCGTGACATGGTACTTACTACAA
LOC_Os10g40740
Os.27587.1.S1_at--177--9011Chr10:21533633..21533657 (25 bp)
TGAATATTATTTTGCCTACTACCTC
LOC_Os10g40740
Os.27587.1.S1_at--205--8311Chr10:21533585..21533609 (25 bp)
GGCTATGAATCTGGACAACGGCTAA
LOC_Os10g40740
Os.27587.1.S1_at--592--8371Chr10:21533495..21533519 (25 bp)
GGCGTCACAACAACCGTGGCATGGT
LOC_Os10g40740
Os.27587.1.S1_at--536--811Chr10:21533475..21533499 (25 bp)
ATGGTGTATATTTTTCTACCCTCTT
LOC_Os10g40740
Os.27587.1.S1_at--1120--10211Chr10:21533424..21533448 (25 bp)
TATTGTCTTGACCTGTATAAACCGG
LOC_Os10g40740
Os.27587.1.S1_at--812--1311Chr10:21533398..21533422 (25 bp)
AGATGGTCATGTACAGCTGTGTTTT
LOC_Os10g40740
Os.27587.1.S1_at--526--5171Chr10:21533366..21533390 (25 bp)
GCAAGCAATTGCACTTTGGTCTGAT
LOC_Os10g40740
Target Sequence 
AAAACGCACAGCAACCGAACGGCATGGAGGCGTACAACCGGATGATGGCAATGTACCAGAAGCTAAACCACCAGCAGCAG
CAGCAGCAGGACCAGCCAAGCAACTCCAGACAATGATCGTGACATGGTACTTACTACAAGTAGTACATGTAAAATGCTAG
TTGTTGTATTTGCACTGAATATTATTTTGCCTACTACCTCCGTCCCAAAATATAACAACTTTTGGCTATGAATCTGGACA
ACGGCTAAAAATGCTTATATTTTGAGACGGAGGGAGTAAATTCCTAATCTTGTGGTTAGATATGAAATAGTACGGCGTCA
CAACAACCGTGGCATGGTGTATATTTTTCTACCCTCTTTTCTTTAGAGGTGCACAGTATATTTATATTGTCTTGACCTGT
ATAAACCGGCAGATGGTCATGTACAGCTGTGTTTTTGTAGAGGCAAGCAATTGCACTTTGGTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis