Browse Element(s) Details


Os.6786.1.S1_a_at

Description gb:AF261271.1
DB_XREF= gi:8118422
GEN=EXPB3
TID=Os.6786.1
CNT=55
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6786 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB3) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AK100959.1 gb:AF261271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4072011/11Beta-expansin 1a precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40680NANA10+21492586..21494013expressed protein
LOC_Os10g40700Os.2404.1.S1_at11/1110+21500469..21502007Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710Os.2373.1.S1_at11/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710OsAffx.22529.1.S1_s_at1/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40720Os.6786.1.S1_a_at11/1110+21518134..21520035Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40730Os.12234.1.S1_s_at11/1110+21529179..21531619Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40740Os.27587.1.S1_at11/1110+21533321..21535913Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g40750Os.46626.1.S1_x_at10/1110+21537078..21537836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6786.1.S1_a_at--1039--10551Chr10:21518538..21518562 (25 bp)
TTCTTTCGTCCAGTACAGCAGCTAA
LOC_Os10g40720
Os.6786.1.S1_a_at--400--4851Chr10:21518453..21518477 (25 bp)
GCTACTATACATACCTCTACGTACG
LOC_Os10g40720
Os.6786.1.S1_a_at--267--6031Chr10:21518422..21518446 (25 bp)
GAGATCGATCGTTTGGCCATTTTTA
LOC_Os10g40720
Os.6786.1.S1_a_at--369--8451Chr10:21518409..21518433 (25 bp)
TGGCCATTTTTATCTGCTCGGGTAT
LOC_Os10g40720
Os.6786.1.S1_a_at--40--4811Chr10:21518394..21518418 (25 bp)
GCTCGGGTATTGATTAGCTCTCCCT
LOC_Os10g40720
Os.6786.1.S1_a_at--992--1571Chr10:21518379..21518403 (25 bp)
AGCTCTCCCTCGGTATTGTATGGAT
LOC_Os10g40720
Os.6786.1.S1_a_at--5--5011Chr10:21518352..21518376 (25 bp)
GCATGGATGGTTCATTAATCTGTCA
LOC_Os10g40720
Os.6786.1.S1_a_at--264--1391Chr10:21518303..21518327 (25 bp)
AGACGTCGGTTGTTGGGTGTCATAT
LOC_Os10g40720
Os.6786.1.S1_a_at--423--2091Chr10:21518276..21518300 (25 bp)
ACATCGCTCGGTGTCTTGAGGTTGA
LOC_Os10g40720
Os.6786.1.S1_a_at--818--5131Chr10:21518233..21518257 (25 bp)
GCAAAGTTTGCATGTGCTGTCCCGC
LOC_Os10g40720
Os.6786.1.S1_a_at--375--1731Chr10:21518195..21518219 (25 bp)
ACCAGTGTCACTGTTTGTGTAACCA
LOC_Os10g40720
Target Sequence 
TTCTTTCGTCCAGTACAGCAGCTAAGCCAATGATCAAGAACAAGCATAATTCATGCCTACTATAGCAGCAGCAGAAGCAG
CATTAGCTACTATACATACCTCTACGTACGACATTTGAGATCGATCGTTTGGCCATTTTTATCTGCTCGGGTATTGATTA
GCTCTCCCTCGGTATTGTATGGATTTGCATGGATGGTTCATTAATCTGTCATCAGGAGTTCGTTTTGAGTAGGTGAGACG
TCGGTTGTTGGGTGTCATATAGACATCGCTCGGTGTCTTGAGGTTGAGAGTGGGATAAGGAGGAGGCAAAGTTTGCATGT
GCTGTCCCGCCCACTCTCACTGTACCAGTGTCACTGTTTGTGTAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6786.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis