Browse Element(s) Details


Os.2373.1.S1_at

Description gb:U95968.1
DB_XREF= gi:2224914
GEN=EXPB2
TID=Os.2373.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2373 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB2) mRNA, complete cds.
PROD=beta-expansin
FL= gb:U95968.1 gb:AK104128.1 gb:AK058895.1 gb:AK061068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4071011/11Beta-expansin 1a precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed
LOC_Os10g40680NANA10+21492586..21494013expressed protein
LOC_Os10g40700Os.2404.1.S1_at11/1110+21500469..21502007Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710Os.2373.1.S1_at11/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710OsAffx.22529.1.S1_s_at1/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40720Os.6786.1.S1_a_at11/1110+21518134..21520035Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40730Os.12234.1.S1_s_at11/1110+21529179..21531619Beta-expansin 1a precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2373.1.S1_at--425--4251Chr10:21506897..21506921 (25 bp)
CCGTGCTGGTGGAGTTCGCCAACAA
LOC_Os10g40710
Os.2373.1.S1_at--977--4991Chr10:21506729..21506753 (25 bp)
GCATGGTCAGCGAGTCCGGCCAGAC
LOC_Os10g40710
Os.2373.1.S1_at--828--2551Chr10:21506676..21506700 (25 bp)
AACTGGAGGGCCAACACCAACTACG
LOC_Os10g40710
Os.2373.1.S1_at--258--1151Chr10:21506661..21506685 (25 bp)
ACCAACTACGGCTCCAAAGTCCAGT
LOC_Os10g40710
Os.2373.1.S1_at--600--2851Chr10:21506645..21506669 (25 bp)
AAGTCCAGTTCCGTTGATCCATCGA
LOC_Os10g40710
Os.2373.1.S1_at--543--6391Chr10:21506622..21506646 (25 bp)
GATCGATCTACCTATGTGCATGCAA
LOC_Os10g40710
Os.2373.1.S1_at--492--3031Chr10:21506599..21506623 (25 bp)
AATGCCTTCGTCGTCTTGTGTCGCC
LOC_Os10g40710
Os.2373.1.S1_at--430--7451Chr10:21506582..21506606 (25 bp)
GTGTCGCCGGTCAAGAACGAATTTT
LOC_Os10g40710
Os.2373.1.S1_at--958--5211Chr10:21506564..21506588 (25 bp)
GAATTTTGATTCTACCGATCGGCAG
LOC_Os10g40710
Os.2373.1.S1_at--718--1191Chr10:21506541..21506565 (25 bp)
AGTTCGGCACTAGTACTGTACTACG
LOC_Os10g40710
Os.2373.1.S1_at--207--7011Chr10:21506529..21506553 (25 bp)
GTACTGTACTACGATTCTGTGTGTG
LOC_Os10g40710
Target Sequence 
CCGTGCTGGTGGAGTTCGCCAACAAGGACGGCACGGTGGTGCAGCTCGACGTCATGGAGTCGCTCCCCAGCGGCAAGCCG
ACGCGGGTCTGGACGCCCATGCGCCGCTCCTGGGGATCCATCTGGCGCCTCGACGCCAACCACCGCCTCCAGGGCCCCTT
CTCCCTNCCGCATGGTCAGCGAGTCCGGCCAGACCGTCATCGCCCACCAGGTCATCCCGGCCAACTGGAGGGCCAACACC
AACTACGGCTCCAAAGTCCAGTTCCGTTGATCCATCGATCGATCTACCTATGTGCATGCAATGCCTTCGTCGTCTTGTGT
CGCCGGTCAAGAACGAATTTTGATTCTACCGATCGGCAGTTCGGCACTAGTACTGTACTACGATTCTGTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis