Browse Element(s) Details


Os.12234.1.S1_s_at

Description gb:AF261272.1
DB_XREF= gi:8118424
GEN=EXPB4
TID=Os.12234.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12234 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB4) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AK060096.1 gb:AF261272.1 gb:AK105981.1 gb:AK101357.1 gb:AK103929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4073011/11Beta-expansin 1a precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40710Os.2373.1.S1_at11/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710OsAffx.22529.1.S1_s_at1/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40720Os.6786.1.S1_a_at11/1110+21518134..21520035Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40730Os.12234.1.S1_s_at11/1110+21529179..21531619Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40740Os.27587.1.S1_at11/1110+21533321..21535913Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g40750Os.46626.1.S1_x_at10/1110+21537078..21537836expressed protein
LOC_Os10g40770OsAffx.14337.1.S1_x_at10/1110+21549431..21550048hypothetical protein
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12234.1.S1_s_at--643--9191Chr10:21531234..21531258 (25 bp)
TCCAGTACAGCTGAACCGCCGCTCG
LOC_Os10g40730
Os.12234.1.S1_s_at--76--9911Chr10:21531312..21531336 (25 bp)
TACTACTGCTATGATGTAATTGTGT
LOC_Os10g40730
Os.12234.1.S1_s_at--658--4871Chr10:21531319..21531343 (25 bp)
GCTATGATGTAATTGTGTTACCGGT
LOC_Os10g40730
Os.12234.1.S1_s_at--979--6251Chr10:21531324..21531348 (25 bp)
GATGTAATTGTGTTACCGGTTGGGT
LOC_Os10g40730
Os.12234.1.S1_s_at--457--8671Chr10:21531332..21531356 (25 bp)
TGTGTTACCGGTTGGGTTCTTTGAG
LOC_Os10g40730
Os.12234.1.S1_s_at--435--8591Chr10:21531379..21531403 (25 bp)
TGGTCGGTCTGTGTTGCGATTTGCA
LOC_Os10g40730
Os.12234.1.S1_s_at--675--7191Chr10:21531381..21531405 (25 bp)
GTCGGTCTGTGTTGCGATTTGCAGA
LOC_Os10g40730
Os.12234.1.S1_s_at--967--7171Chr10:21531385..21531409 (25 bp)
GTCTGTGTTGCGATTTGCAGAAACC
LOC_Os10g40730
Os.12234.1.S1_s_at--1027--10031Chr10:21531392..21531416 (25 bp)
TTGCGATTTGCAGAAACCGGGCGAG
LOC_Os10g40730
Os.12234.1.S1_s_at--1145--4031Chr10:21531395..21531419 (25 bp)
CGATTTGCAGAAACCGGGCGAGCGA
LOC_Os10g40730
Os.12234.1.S1_s_at--505--3411Chr10:21531402..21531426 (25 bp)
CAGAAACCGGGCGAGCGAAAGAAGA
LOC_Os10g40730
Target Sequence 
TCCAGTACAGCTGAACCGCCGCTCGCCGGCGGCGACCCTCGGCGCCGGCATCGCCGCCGCTGCTGCTGCTAGTAATACTA
CTACTGCTATGATGTAATTGTGTTACCGGTTGGGTTCTTTGAGTTTGTTGGGGTTGGGGATTGTGTGGTCGGTCTGTGTT
GCGATTTGCAGAAACCGGGCGAGCGAAAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12234.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis