Browse Element(s) Details


OsAffx.22529.1.S1_s_at

Description gb:NM_186051.1
DB_XREF= gi:34899187
GEN=P0453E03.30
TID=OsAffx.22529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to alcohol dehydrogenase (P0453E03.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4683011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g468401/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g402501/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g407101/11Beta-expansin 1a precursor, putative, expressed
LOC_Os07g469401/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed
LOC_Os07g46800NANA7+27968170..27968616hypothetical protein
LOC_Os07g46810OsAffx.16738.1.S1_at11/117+27980212..27981050expressed protein
LOC_Os07g46820Os.34737.2.S1_x_at11/117+27981530..27986262RNA recognition motif family protein, expressed
LOC_Os07g46830OsAffx.22529.1.S1_s_at11/117+27989502..27990897NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840Os.27920.1.A1_at11/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840OsAffx.22529.1.S1_s_at1/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_s_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.1.S1_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_x_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.7935.2.S1_x_at4/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846OsAffx.28936.1.S1_x_at1/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.2.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.28282.2.S1_x_at4/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_x_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860Os.7935.2.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.31756.5.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0009908biological_processflower development
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22529.1.S1_s_at--1120--4132Chr07:27990314..27990338 (25 bp)
CGCGGCACGGGCAGCTCGACGTCAT
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--1037--1911Chr07:27990320..27990344 (25 bp)
ACGGGCAGCTCGACGTCATGGTCAA
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--479--10631Chr07:27990406..27990430 (25 bp)
TTCGACGCCGTCATGGCGGTGAACA
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--213--4031Chr07:27990414..27990438 (25 bp)
CGTCATGGCGGTGAACACGCGCGGC
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--132--7711Chr07:27990521..27990545 (25 bp)
GGGTGCTCGGCAGCGTGACGCCGCA
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--731--7371Chr07:27990535..27990559 (25 bp)
GTGACGCCGCACCCGTACAGCGTGT
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--754--9274Chr07:27995148..27995172 (25 bp)
TCCGGCGTGCGCGTGAACGCCATCT
LOC_Os07g46840
OsAffx.22529.1.S1_s_at--768--3351Chr07:27990654..27990678 (25 bp)
CACGCCGCTGGTGATGCGCATCATG
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--854--4111Chr07:27990670..27990694 (25 bp)
CGCATCATGGCGGAGTGGTACCCCG
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--8--4171Chr07:27990715..27990739 (25 bp)
CGCCGCGTCGTGGAGCGGGAGATCA
LOC_Os07g46830
OsAffx.22529.1.S1_s_at--847--8551Chr07:27990746..27990770 (25 bp)
TGGAGGGCGCGACGCTGGAGCCCGA
LOC_Os07g46830
Target Sequence 
CGCGGCACGGGCAGCTCGACGTCATGGTCAACAACGCCGGCATCGTGGGCTCCCTGTCGCGCCCCCCGCTCGGCGCCCTC
GACCTCGCCGACTTCGACGCCGTCATGGCGGTGAACACGCGCGGCGTCCTCGCGGGCGTCAAGCACGCCGCGCGCGTCAT
GGCGCCGCGCCGCCGCGGCAGCATCATCTGCGTGGCGAGCGTCGCCGGGGTGCTCGGCAGCGTGACGCCGCACCCGTACA
GCGTGTCCAAGGCCGCCGTGCTCGGCGCGGTCCGCGCCGCCGCCGGCGAGATGGCGCGCTCCGGCGTGCGCGTGAACGCC
ATCTCCCCCAACTACATCCCCACGCCGCTGGTGATGCGCATCATGGCGGAGTGGTACCCCGGGGCGAGCGCCGACGAGCA
CCGCCGCGTCGTGGAGCGGGAGATCAACGAGATGGAGGGCGCGACGCTGGAGCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22529.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis